Gliniewicz K, Plant KP, LaPatra SE, LaFrentz BR, Cain K, Snekvik KR, et al. Comparative proteomic analysis of virulent and rifampicin-attenuated Flavobacterium psychrophilum. J Fish Dis. 2012;35(7):529–39.
Article
CAS
PubMed
Google Scholar
Henríquez-Nuñez H, Evrard O, Kronvall G, Avendaño-Herrera R. Antimicrobial susceptibility and plasmid profiles of Flavobacterium psychrophilum strains isolated in Chile. Aquaculture. 2012;354:38–44.
Article
Google Scholar
Castillo D, Higuera G, Villa M, Middelboe M, Dalsgaard I, Madsen L, et al. Diversity of Flavobacterium psychrophilum and the potential use of its phages for protection against bacterial cold water disease in salmonids. J Fish Dis. 2012;35(3):193–201.
Article
CAS
PubMed
Google Scholar
Boutin S, Bernatchez L, Audet C, Derome N. Antagonistic effect of indigenous skin bacteria of brook charr (Salvelinus fontinalis) against Flavobacterium columnare and F. psychrophilum. Vet Microbiol. 2012;155(2–4):355–61.
Article
PubMed
Google Scholar
Nematollahi A, Decostere A, Pasmans F, Haesebrouck F. Flavobacterium psychrophilum infections in salmonid fish. J Fish Dis. 2003;26(10):563–74.
Article
CAS
PubMed
Google Scholar
Barnes ME, Brown ML. A review of Flavobacterium psychrophilum biology, clinical signs, and Bacterial Cold Water Disease prevention and treatment. Open Fish Sc J. 2011;4:40–8.
Article
Google Scholar
Long A, Call DR, Cain KD. Investigation of the link between broodstock infection, vertical transmission, and prevalence of Flavobacterium psychrophilum in eggs and progeny of rainbow trout and coho salmon. J Aquatic Animal Health. 2014;26(2):66–77.
Article
CAS
Google Scholar
Sudheesh PS, LaFrentz BR, Call DR, Siems WF, LaPatra SE, Wiens GD, et al. Identification of potential vaccine target antigens by immunoproteomic analysis of a virulent and a non-virulent strain of the fish pathogen Flavobacterium psychrophilum. Dis Aquatic Org. 2007;74(1):37–47.
Article
CAS
Google Scholar
Nishiki I, Furukawa M, Matui S, Itami T, Nakai T, Yoshida T. Epidemiological study on Lactococcus garvieae isolates from fish in Japan. Fish Sci. 2011;77(3):367–73.
Article
CAS
Google Scholar
Suanyuk N, Kong FR, Ko D, Gilbert GL, Supamattaya K. Occurrence of rare genotypes of Streptococcus agalactiae in cultured red tilapia Oreochromis sp. and Nile tilapia O. niloticus in Thailand-relationship to human isolates? Aquaculture. 2008;284(1–4):35–40.
Article
CAS
Google Scholar
Shukla S, Shukla SK, Sharma R, Kumar A. Identification of Mycobacterium species from apparently healthy freshwater aquarium fish using partial sequencing and PCR- RFLP analysis of heat shock protein (hsp65) gene. J Appl Ichthyol. 2014;30(3):513–20.
Article
CAS
Google Scholar
Erfanmanesh A, Soltani M, Pirali E, Mohammadian S, Taherimirghaed A. Genetic characterization of Streptococcus iniae in diseased farmed rainbow trout (Onchorhynchus mykiss) in Iran. Sci World J. 2012;6.
Steigen A, Karlsbakk E, Plarre H, Watanabe K, Overgard AC, Brevik O, et al. A new intracellular bacterium, Candidatus Similichlamydia labri sp. nov. (Chlamydiaceae) producing epitheliocysts in ballan wrasse, Labrus bergylta (Pisces, Labridae). Arch Microbiol. 2015;197(2):311–8.
Article
CAS
PubMed Central
PubMed
Google Scholar
Abayneh T, Colquhoun DJ, Sorum H. Multi-locus sequence analysis (MLSA) of Edwardsiella tarda isolates from fish. Vet Microbiol. 2012;158(3–4):367–75.
Article
CAS
PubMed
Google Scholar
Zhang XJ, Yang WM, Wu H, Gong XN, Li AH. Multilocus sequence typing revealed a clonal lineage of Aeromonas hydrophila caused motile Aeromonas septicemia outbreaks in pond-cultured cyprinid fish in an epidemic area in central China. Aquaculture. 2014;432:1–6.
Article
Google Scholar
Abayneh T, Colquhoun DJ, Austin D, Sørum H. Multilocus variable number tandem repeat analysis of Edwardsiella piscicida isolates pathogenic to fish. J Fish Dis. 2014;37(11):941–8.
Article
CAS
PubMed
Google Scholar
Sun G, Chen C, Li J, Gui X, Li X, Chen L, et al. Discriminatory potential of a novel set of variable number of tandem repeats for genotyping Mycobacterium marinum. Vet Microbiol. 2011;152(1–2):200–4.
Article
CAS
PubMed
Google Scholar
Torsvik J, Johansson S, Johansen A, Ek J, Minton J, Raeder H, et al. Mutations in the VNTR of the carboxyl-ester lipase gene (CEL) are a rare cause of monogenic diabetes. Hum Genet. 2010;127(1):55–64.
Article
CAS
PubMed
Google Scholar
Lindstedt B-A. Genotyping of selected bacterial enteropathogens in Norway. Int J Med Microbiol. 2011;301(8):648–53.
Article
PubMed
Google Scholar
Wang X, Gu W, Cui Z, Luo L, Cheng P, Xiao Y, et al. Multiple-locus variable-number tandem-repeat analysis of pathogenic Yersinia enterocolitica in China. PLoS ONE. 2012;7(5):e37309.
Article
CAS
PubMed Central
PubMed
Google Scholar
Fujita K, Ito Y, Hirai T, Maekawa K, Imai S, Tatsumi S, et al. Genetic relatedness of Mycobacterium avium-intracellulare complex isolates from patients with pulmonary MAC disease and their residential soils. Clin Microbiol Infection. 2013;19(6):537–41.
Article
CAS
Google Scholar
Hannou N, Llop P, Faure D, López MM, Moumni M. Characterization of Erwinia amylovora strains from Middle Atlas Mountains in Morocco by PCR based on tandem repeat sequences. Eur J Plant Pathol. 2013;136:655–974.
Article
Google Scholar
Skaala Ø, Høyheim B, Glover K, Dahle G. Microsatellite analysis in domesticated and wild Atlantic salmon (Salmo salar L.): allelic diversity and identification of individuals. Aquaculture. 2004;240(1–4):131–43.
Article
CAS
Google Scholar
Ferrada S, Canales-Aguirre CB, Galleguillos R, Barrera A, Gallardo JA. Development of microsatellite markers in the copepod, Caligus rogercresseyi Boxshall & Bravo, 2000 (Copepoda, Caligidae). Crustaceana. 2011;84(3):375–81.
Article
Google Scholar
Broza YY, Danin-Poleg Y, Lerner L, Valinsky L, Broza M, Kashi Y. Epidemiologic study of Vibrio vulnificus infections by using variable number tandem repeats. Emerg Infect Dis. 2009;15(8):1282–5.
Article
PubMed Central
PubMed
Google Scholar
Brevik OJ, Ottem KF, Nylund A. Multiple-locus, variable number of tandem repeat analysis (MLVA) of the fish-pathogen Francisella noatunensis. BMC Vet Res. 2011;7.
Matejusova I, Bain N, Colquhoun DJ, Feil EJ, McCarthy U, McLennan D, et al. Multilocus variable-number tandem-repeat genotyping of Renibacterium salmoninarum, a bacterium causing bacterial kidney disease in salmonid fish. BMC Microbiol. 2013;13.
Nilsen H, Sundell K, Duchaud E, Nicolas P, Dalsgaard I, Madsen L, et al. Multilocus sequence typing identifies epidemic clones of Flavobacterium psychrophilum in Nordic countries. Applied Env Microbiol. 2014;80(9):2728–36.
Article
Google Scholar
Fujiwara-Nagata E, Ikeda J, Sugahara K, Eguchi M. A novel genotyping technique for distinguishing between Flavobacterium psychrophilum isolates virulent and avirulent to ayu, Plecoglossus altivelis altivelis (Temminck & Schlegel). J Fish Dis. 2012;35(7):471–80.
Article
CAS
PubMed
Google Scholar
Hesami S, Allen KJ, Metcalf D, Ostland VE, MacInnes JI, Lumsden JS. Phenotypic and genotypic analysis of Flavobacterium psychrophilum isolates from Ontario salmonids with bacterial coldwater disease. Can J Microbiol. 2008;54(8):619–29.
Article
CAS
PubMed
Google Scholar
Sundell K, Wiklund T. Characteristics of epidemic and sporadic Flavobacterium psychrophilum sequence types. Aquaculture. 2015;441:51–6.
Article
CAS
Google Scholar
Nicolas P, Mondot S, Achaz G, Bouchenot C, Bernardet JF, Duchaud E. Population structure of the fish-pathogenic bacterium Flavobacterium psychrophilum. Applied Env Microbiol. 2008;74(12):3702–9.
Article
CAS
Google Scholar
Siekoula-Nguedia C, Blanc G, Duchaud E, Calvez S. Genetic diversity of Flavobacterium psychrophilum isolated from rainbow trout in France: Predominance of a clonal complex. Vet Microbiol. 2012;161(1–2):169–78.
Article
CAS
PubMed
Google Scholar
Strepparava N, Nicolas P, Wahli T, Segner H, Petrini O. Molecular epidemiology of Flavobacterium psychrophilum from Swiss fish farms. Dis Aquatic Org. 2013;105(3):203–10.
Article
CAS
Google Scholar
van Belkum A. Tracing isolates of bacterial species by multilocus variable number of tandem repeat analysis (MLVA). FEMS Immunol Med Microbiol. 2007;49(1):22–7.
Article
PubMed
Google Scholar
Apablaza P, Løland AD, Brevik ØJ, Ilardi P, Battaglia J, Nylund A. Genetic variation among Flavobacterium psychrophilum isolates from wild and farmed salmonids in Norway and Chile. J Applied Microbiol. 2013;114(4):934–46.
Article
CAS
Google Scholar
Avendaño-Herrera R, Houel A, Irgang R, Bernardet JF, Godoy M, Nicolas P, et al. Introduction, expansion and coexistence of epidemic Flavobacterium psychrophilum lineages in Chilean fish farms. Vet Microbiol. 2014;170(3–4):298–306.
Article
PubMed
Google Scholar
Sernapesca: Statitics of ovas importation by origin 2008–2013. Servicio Nacional de Pesca. http://sernapesca.cl 2013. (In spanish)
Kibenge MJT, Iwamoto T, Wang Y, Morton A, Godoy MG, Kibenge FSB. Whole-genome analysis of piscine reovirus (PRV) shows PRV represents a new genus in family Reoviridae and its genome segment S1 sequences group it into two separate sub-genotypes. Virol J. 2013;10.
Vike S, Nylund S, Nylund A. ISA virus in Chile: evidence of vertical transmission. Arch Virol. 2009;154(1):1–8.
Article
CAS
PubMed
Google Scholar
Mutoloki S, Evensen O. Sequence similarities of the capsid gene of Chilean and European isolates of infectious pancreatic necrosis virus point towards a common origin. J Gen Virol. 2011;92:1721–6.
Article
CAS
PubMed
Google Scholar
Laroucau K, Di Francesco A, Vorimore F, Thierry S, Pingret JL, Bertin C, et al. Multilocus variable-number tandem-repeat analysis scheme for Chlamydia felis genotyping: comparison with multilocus sequence typing. J Clin Microbiol. 2012;50(6):1860–6.
Article
CAS
PubMed Central
PubMed
Google Scholar
Broza YY, Raz N, Lerner L, Danin-Poleg Y, Kashi Y. Genetic diversity of the human pathogen Vibrio vulnificus: A new phylogroup. Int J Food Microbiol. 2012;153(3):436–43.
Article
CAS
PubMed
Google Scholar
Russell CL, Smith EM, Calvo-Bado LA, Green LE, Wellington EMH, Medley GF, et al. Multiple locus VNTR analysis highlights that geographical clustering and distribution of Dichelobacter nodosus, the causal agent of footrot in sheep, correlates with inter-country movements. Infect Gen Evol. 2014;22:273–9.
Article
CAS
Google Scholar
Ottem KF, Nylund A, Karlsbakk E, Friis-Moller A, Kamaishi T. Elevation of Francisella philomiragia subsp noatunensis Mikalsen et al. (2007) to Francisella noatunensis comb. nov syn. Francisella piscicida Ottem et al. (2008) syn. nov. and characterization of Francisella noatunensis subsp. orientalis subsp nov., two important fish pathogens. J Applied Microbiol. 2009;106(4):1231–43.
Article
CAS
Google Scholar
Duodu S, Wan XH, Tandstad NM, Larsson P, Myrtennas K, Sjodin A, et al. An improved multiple-locus variable-number of tandem repeat analysis (MLVA) for the fish pathogen Francisella noatunensis using capillary electrophoresis. BMC Vet Res. 2013;9.
Bastardo A, Ravelo C, Romalde JL. Multilocus sequence typing reveals high genetic diversity and epidemic population structure for the fish pathogen Yersinia ruckeri. Env Microbiol. 2012;14(8):1888–97.
Article
CAS
Google Scholar
Cepeda C, Garcia-Marquez S, Santos Y. Improved growth of Flavobacterium psychrophilum using a new culture medium. Aquaculture. 2004;238(1–4):75–82.
Article
Google Scholar
Giovannoni SJ. The polymerase chain reduction. In: Stakkebrandt E, Goodfellow M, editors. Modern Microbial Methods: Sequencing and Hybridization Techniques in Bacterial Systematics. Wiley: Chichester; 1991. p. 177––203.
Google Scholar