Carlson CJ, et al. Climate change will drive novel cross-species viral transmission. BioRxiv. 2021;2020(01):24.918755.
Google Scholar
Plowright RK, et al. Land use-induced spillover: a call to action to safeguard environmental, animal, and human health. Lancet Planetary Health. 2021;5(4):e237–45.
Article
Google Scholar
Coronaviridae Study Group of the International Committee on Taxonomy of Viruses. The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2. Nat Microbiol. 2020;5(4):536–44.
Article
Google Scholar
Zhou P, et al. Addendum: a pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature. 2020;588(7836):E6.
Article
CAS
Google Scholar
Wu F, et al. A new coronavirus associated with human respiratory disease in China. Nature. 2020;579(7798):265–9.
Article
CAS
Google Scholar
Vlasova AN, et al. Novel canine coronavirus isolated from a hospitalized patient with pneumonia in East Malaysia. Clin Infect Dis. 2022;74(3):446–54.
Article
CAS
Google Scholar
Woo PC, et al. Discovery of seven novel mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus. J Virol. 2012;86(7):3995–4008.
Article
CAS
Google Scholar
He WT, et al. Genomic epidemiology, evolution, and transmission dynamics of porcine Deltacoronavirus. Mol Biol Evol. 2020;37(9):2641–54.
Article
CAS
Google Scholar
Wang L, et al. Detection and genetic characterization of deltacoronavirus in pigs, Ohio, USA, 2014. Emerg Infect Dis. 2014;20(7):1227–30.
Article
CAS
Google Scholar
Wang L, et al. Porcine coronavirus HKU15 detected in 9 US states, 2014. Emerg Infect Dis. 2014;20(9):1594–5.
Article
Google Scholar
Pasick J, et al. Investigation into the role of potentially contaminated feed as a source of the first-detected outbreaks of porcine epidemic diarrhea in Canada. Transbound Emerg Dis. 2014;61(5):397–410.
Article
CAS
Google Scholar
More-Bayona JA, et al. First isolation and whole genome characterization of porcine deltacoronavirus from pigs in Peru. Transbound Emerg Dis. 2022.
Pérez-Rivera C, et al. First report and phylogenetic analysis of porcine deltacoronavirus in Mexico. Transbound Emerg Dis. 2019;66(4):1436–41.
Google Scholar
Janetanakit T, et al. Porcine Deltacoronavirus, Thailand, 2015. Emerg Infect Dis. 2016;22(4):757–9.
Article
CAS
Google Scholar
Le VP, et al. A novel strain of porcine deltacoronavirus in Vietnam. Arch Virol. 2018;163(1):203–7.
Article
CAS
Google Scholar
Lorsirigool A, et al. The first detection and full-length genome sequence of porcine deltacoronavirus isolated in Lao PDR. Arch Virol. 2016;161(10):2909–11.
Article
CAS
Google Scholar
Lee S, Lee C. Complete genome characterization of Korean porcine Deltacoronavirus strain KOR/KNU14-04/2014. Genome Announc. 2014;2(6).
Suzuki T, et al. Genetic characterization and pathogenicity of Japanese porcine deltacoronavirus. Infect Genet Evol. 2018;61:176–82.
Article
CAS
Google Scholar
Wang Q, et al. Emerging and re-emerging coronaviruses in pigs. Curr Opin Virol. 2019;34:39–49.
Article
CAS
Google Scholar
Wu JL, et al. Expression profile analysis of 5-day-old neonatal piglets infected with porcine Deltacoronavirus. BMC Vet Res. 2019;15(1):117.
Article
Google Scholar
Liu Q, Wang HY. Porcine enteric coronaviruses: an updated overview of the pathogenesis, prevalence, and diagnosis. Vet Res Commun. 2021;45(2–3):75–86.
Article
Google Scholar
Li B, et al. Porcine deltacoronavirus causes diarrhea in various ages of field-infected pigs in China. Biosci Rep. 2019;39(9).
Jung K, et al. Calves are susceptible to infection with the newly emerged porcine deltacoronavirus, but not with the swine enteric alphacoronavirus, porcine epidemic diarrhea virus. Arch Virol. 2017;162(8):2357–62.
Article
CAS
Google Scholar
Liang Q, et al. Susceptibility of chickens to porcine Deltacoronavirus infection. Viruses. 2019;11(6):573.
Article
CAS
Google Scholar
Cruz-Pulido D, et al. Comparative transcriptome profiling of human and pig intestinal epithelial cells after porcine Deltacoronavirus infection. Viruses. 2021;13(2).
Li W, et al. Broad receptor engagement of an emerging global coronavirus may potentiate its diverse cross-species transmissibility. Proc Natl Acad Sci U S A. 2018;115(22):E5135–e5143.
Article
CAS
Google Scholar
Lednicky JA, et al. Independent infections of porcine deltacoronavirus among Haitian children. Nature. 2021;600(7887):133–7.
Article
CAS
Google Scholar
Alexander FC. Experiences with African swine fever in Haiti. Ann N Y Acad Sci. 1992;653:251–6.
Article
CAS
Google Scholar
Song D, et al. Newly emerged porcine Deltacoronavirus associated with Diarrhoea in swine in China: identification, prevalence and full-length genome sequence analysis. Transbound Emerg Dis. 2015;62(6):575–80.
Article
CAS
Google Scholar
Li G, et al. Full-length genome sequence of porcine Deltacoronavirus strain USA/IA/2014/8734. Genome Announc. 2014;2(2).
Zhu X, et al. Porcine deltacoronavirus nsp5 inhibits interferon-β production through the cleavage of NEMO. Virology. 2017;502:33–8.
Article
CAS
Google Scholar
Zhu X, et al. Porcine Deltacoronavirus nsp5 antagonizes type I interferon signaling by cleaving STAT2. J Virol. 2017;91(10).
Zhu X, et al. Porcine Deltacoronavirus nsp5 cleaves DCP1A to decrease its antiviral activity. J Virol. 2020;94(15).
Fang P, et al. Porcine deltacoronavirus nsp10 antagonizes interferon-β production independently of its zinc finger domains. Virology. 2021;559:46–56.
Article
CAS
Google Scholar
Liu X, et al. Porcine deltacoronavirus nsp15 antagonizes interferon-β production independently of its endoribonuclease activity. Mol Immunol. 2019;114:100–7.
Article
CAS
Google Scholar
Zhang M, et al. Genetic manipulation of porcine deltacoronavirus reveals insights into NS6 and NS7 functions: a novel strategy for vaccine design. Emerg Microbes Infect. 2020;9(1):20–31.
Article
Google Scholar
Fang P, et al. Porcine Deltacoronavirus accessory protein NS6 antagonizes interferon Beta production by interfering with the binding of RIG-I/MDA5 to double-stranded RNA. J Virol. 2018;92(15).
Fang P, et al. Porcine Deltacoronavirus accessory protein NS7a antagonizes IFN-β production by competing with TRAF3 and IRF3 for binding to IKKε. Front Cell Infect Microbiol. 2020;10:257.
Article
CAS
Google Scholar
Shang J, et al. Cryo-Electron microscopy structure of porcine Deltacoronavirus spike protein in the Prefusion state. J Virol. 2018;92(4).
Xiong X, et al. Glycan shield and fusion activation of a Deltacoronavirus spike glycoprotein fine-tuned for enteric infections. J Virol. 2018;92(4).
Niu X, et al. Chimeric porcine Deltacoronaviruses with sparrow coronavirus spike protein or the receptor-binding domain infect pigs but lose virulence and intestinal tropism. Viruses. 2021;13(1).
Wang B, et al. Porcine Deltacoronavirus engages the transmissible gastroenteritis virus functional receptor porcine aminopeptidase N for infectious cellular entry. J Virol. 2018;92(12).
Zhu X, et al. Contribution of porcine aminopeptidase N to porcine deltacoronavirus infection. Emerg Microbes Infect. 2018;7(1):65.
Article
Google Scholar
Stoian A, et al. The use of cells from ANPEP knockout pigs to evaluate the role of aminopeptidase N (APN) as a receptor for porcine deltacoronavirus (PDCoV). Virology. 2020;541:136–40.
Article
CAS
Google Scholar
Yuan Y, et al. Porcine Deltacoronavirus utilizes sialic acid as an attachment receptor and trypsin can influence the binding activity. Viruses. 2021;13(12).
Chen R, et al. Identification of the immunodominant neutralizing regions in the spike glycoprotein of porcine deltacoronavirus. Virus Res. 2020;276:197834.
Article
CAS
Google Scholar
Huang Y, et al. The recombinant pseudorabies virus expressing porcine deltacoronavirus spike protein is safe and effective for mice. BMC Vet Res. 2022;18(1):16.
Article
CAS
Google Scholar
Zhang H, et al. Prevalence, phylogenetic and evolutionary analysis of porcine deltacoronavirus in Henan province, China. Prev Vet Med. 2019;166:8–15.
Article
Google Scholar
Liang Q, et al. Complete genome sequences of two porcine Deltacoronavirus strains from Henan Province, China. Microbiol Resour Announc. 2019;8(10).
Liu BJ, et al. Isolation and phylogenetic analysis of porcine deltacoronavirus from pigs with diarrhoea in Hebei province, China. Transbound Emerg Dis. 2018;65(3):874–82.
Article
CAS
Google Scholar
Mai K, et al. The detection and phylogenetic analysis of porcine deltacoronavirus from Guangdong Province in southern China. Transbound Emerg Dis. 2018;65(1):166–73.
Article
CAS
Google Scholar
Huang H, et al. Emergence of Thailand-like strains of porcine deltacoronavirus in Guangxi Province, China. Vet Med Sci. 2020;6(4):854–9.
Article
CAS
Google Scholar
Sun W, et al. Genetic characterization and phylogenetic analysis of porcine deltacoronavirus (PDCoV) in Shandong Province, China. Virus Res. 2020;278:197869.
Article
CAS
Google Scholar
Feng Y, et al. Prevalence and phylogenetic analysis of porcine deltacoronavirus in Sichuan province, China. Arch Virol. 2020;165(12):2883–9.
Article
CAS
Google Scholar
Dong N, et al. Porcine Deltacoronavirus in mainland China. Emerg Infect Dis. 2015;21(12):2254–5.
Article
CAS
Google Scholar
Tang P, et al. Porcine deltacoronavirus and its prevalence in China: a review of epidemiology, evolution, and vaccine development. Arch Virol. 2021;166(11):2975–88.
Article
CAS
Google Scholar
Ding G, et al. Development of a multiplex RT-PCR for the detection of major diarrhoeal viruses in pig herds in China. Transbound Emerg Dis. 2020;67(2):678–85.
Article
CAS
Google Scholar
Zhang F, et al. Prevalence and phylogenetic analysis of porcine diarrhea associated viruses in southern China from 2012 to 2018. BMC Vet Res. 2019;15(1):470.
Article
CAS
Google Scholar
Smith GJ, et al. Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza a epidemic. Nature. 2009;459(7250):1122–5.
Article
CAS
Google Scholar
Sievers F, et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal omega. Mol Syst Biol. 2011;7:539.
Article
Google Scholar
Trifinopoulos J, et al. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Res. 2016;44(W1):W232–5.
Article
CAS
Google Scholar
Lole KS, et al. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol. 1999;73(1):152–60.
Article
CAS
Google Scholar
Garcia-Boronat, M. et al. (2008) PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery. Nucleic acids research 36 (suppl_2), W35-W41.
Kabat E, et al. Unusual distributions of amino acids in complementarity determining (hypervariable) segments of heavy and light chains of immunoglobulins and their possible roles in specificity of antibody-combining sites. J Biol Chem. 1977;252(19):6609–16.
Article
CAS
Google Scholar
Martin, D.P. et al. (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol 1 (1), vev003.
Kumar S, et al. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 2018;35(6):1547–9.
Article
CAS
Google Scholar
Jespersen MC, et al. BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes. Nucleic Acids Res. 2017;45(W1):W24–9.
Article
CAS
Google Scholar
Roy A, et al. I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc. 2010;5(4):725–38.
Article
CAS
Google Scholar
Lau SKP, et al. Discovery and sequence analysis of four Deltacoronaviruses from birds in the Middle East reveal interspecies jumping with recombination as a potential mechanism for avian-to-avian and avian-to-mammalian transmission. J Virol. 2018;92(15).
Graham RL, Baric RS. Recombination, reservoirs, and the modular spike: mechanisms of coronavirus cross-species transmission. J Virol. 2010;84(7):3134–46.
Article
CAS
Google Scholar
Zúñiga S, et al. Sequence motifs involved in the regulation of discontinuous coronavirus subgenomic RNA synthesis. J Virol. 2004;78(2):980–94.
Article
Google Scholar
Tian PF, et al. Evidence of recombinant strains of porcine epidemic diarrhea virus, United States, 2013. Emerg Infect Dis. 2014;20(10):1735–8.
Article
CAS
Google Scholar
Lau SK, et al. Molecular epidemiology of human coronavirus OC43 reveals evolution of different genotypes over time and recent emergence of a novel genotype due to natural recombination. J Virol. 2011;85(21):11325–37.
Article
CAS
Google Scholar
Lau SK, et al. Ecoepidemiology and complete genome comparison of different strains of severe acute respiratory syndrome-related Rhinolophus bat coronavirus in China reveal bats as a reservoir for acute, self-limiting infection that allows recombination events. J Virol. 2010;84(6):2808–19.
Article
CAS
Google Scholar
Zhao Y, et al. Characterization and pathogenicity of the porcine Deltacoronavirus isolated in Southwest China. Viruses. 2019;11(11).
Nikolaidis M, et al. The neighborhood of the spike gene is a hotspot for modular Intertypic homologous and nonhomologous recombination in coronavirus genomes. Mol Biol Evol. 2021;39(1).
Decaro N, et al. Recombinant canine coronaviruses related to transmissible gastroenteritis virus of swine are circulating in dogs. J Virol. 2009;83(3):1532–7.
Article
CAS
Google Scholar
Su S, et al. Epidemiology, genetic recombination, and pathogenesis of coronaviruses. Trends Microbiol. 2016;24(6):490–502.
Article
CAS
Google Scholar
Li F. Structure, function, and evolution of coronavirus spike proteins. Annu Rev Virol. 2016;3(1):237–61.
Article
CAS
Google Scholar
Liu Y, et al. Roles of two major domains of the porcine Deltacoronavirus S1 subunit in receptor binding and neutralization. J Virol. 2021;95(24):e0111821.
Article
Google Scholar