Table 2 Summary of reference sequenced used in this study
Strain name | Accesion numbei | Country | Host | Complete genome or capsid gene |
|---|---|---|---|---|
CCV-A | KY363870.1 | China | canine | Capsid |
CCV-B | KY363871.1 | China | canine | Capsid |
CCV-B | KY363872.1 | China | canine | Capsid |
PCV3/CN/Guangdong-CH/2016 | MF589112.1 | China | Pig | Capsid |
PCV3/CN/Guangxi002/2017 | MF374971.1 | China | Pig | Capsid |
PCV3/CN/Guangxi003/2017 | MF374972.1 | China | Pig | Capsid |
PCV3/CN/Jiangxi-S1/2017 | MF589133.1 | China | Pig | Capsid |
PCV3/CN/Liaoning-12/2016 | KY354047.1 | China | Pig | Capsid |
PCV3/CN/Liaoning-23/2016 | KY354055.1 | China | Pig | Capsid |
CH/GX/1776D/2017 | MG550107.1 | China | Pig | Complete |
CHN_Shanghai_0706_2016 | KY865242.1 | China | Pig | Complete |
CHN_Shanghai_0708_2016 | KY865243.1 | China | Pig | Complete |
CN/Hubei-618/2016 | KY354039.1 | China | Pig | Complete |
CN_FJ-1 | KY753912.1 | China | Pig | Complete |
CN GD-1 | KY753911.1 | China | Pig | Complete |
CN_GD-2 | KY753913.1 | China | Pig | Complete |
NWHEB21 | MG564174.1 | China | Pig | Complete |
NWHEB2 | MG564175.1 | China | Pig | Complete |
PCV3/CN/Anhui-14/201611 | MF084994.1 | China | Pig | Complete |
PCV3/CN/Fujian-12/2016 | KY075987.1 | China | Pig | Complete |
PCV3/CN/Fujian-5/2016 | KY075986.1 | China | Pig | Complete |
PCV3/CN/GDSJ1/2017 | MF405271.1 | China | Pig | Complete |
PCV3/CN/Henan-13/2016 | KY075988.1 | China | Pig | Complete |
PCV3/CN/Guangdong-HY1/2016 | MF589102.1 | China | Pig | Complete |
PCV3/CN/Guangdong-HZ4/2015 | MF589103.1 | China | Pig | Complete |
PCV3/CN/Guangdong-MX3/2015 | MF589104.1 | China | Pig | Complete |
PCV3/CN/Guangdong-SG1/2016 | MF589105.1 | China | Pig | Complete |
PCV3/CN/GXHJ2/2017 | MF405277.1 | China | Pig | Complete |
PCV3/CN/GXLJ1/2017 | MF405276.1 | China | Pig | Complete |
PCV3/CN/Shandong-1/201703 | KY778776.1 | China | Pig | Complete |
PCV3/CN/Shandong-2/201703 | KY778777.1 | China | Pig | Complete |
PCV3-Chian/GX2016–2 | MF155642.1 | China | Pig | Complete |
PCV3-China/GD2016 | KY418606.2 | China | Pig | Complete |
PCV3-China/GX2016–1 | MF155641.1 | China | Pig | Complete |
PCV3-China/GX2016–3 | MF155643.1 | China | Pig | Complete |
PCV3-CHN/CC2016 | KY421348.1 | China | Pig | Complete |
PCV3-CHN/GD2016 | KY421347.1 | China | Pig | Complete |
PCV3/Thailand/PB01/17 | MG310152.1 | Thailand | Pig | Complete |
PCV3-IT/CO2017 | MF162298.1 | Italy | Pig | Complete |
PCV3-IT/MN2017 | MF162299.1 | Italy | Pig | Complete |
PCV3-US/MN2016 | KX898030.1 | USA | Pig | Complete |
PCV3-US/MO2015 | KX778720.1 | USA | Pig | Complete |
PCV3-US/SD2016 | KX966193.1 | USA | Pig | Complete |
DE5.15 | MG014378.1 | Germany | Pig | Capsid |
DE13.20 | MG014365.1 | Germany | Pig | Complete |
DE18.2 | MG014365.1 | Germany | Pig | Complete |
DE27.16 | MG014370.1 | Germany | Pig | Complete |
PCK3–1701 | MF611876.1 | South Korea | Pig | Complete |
PCK3–1702 | MF611877.1 | South Korea | Pig | Complete |
PCV3/KU-1602 | KY996338.1 | South Korea | Pig | Complete |
PCV3/KU-1603 | KY996339.1 | South Korea | Pig | Complete |
PCV3/KU-1605 | KY996341.1 | South Korea | Pig | Complete |
PCV3/KU-1606 | KY996342.1 | South Korea | Pig | Complete |
PCV3/KU-1608 | KY996344.1 | South Korea | Pig | Complete |
PCV3-BR/RS/6 | MF079253.1 | Brazil | Pig | Complete |
PCV3-BR/RS/8 | MF079254.1 | Brazil | Pig | Complete |