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Table 1 Primers sequences, target genes, amplicon sizes and cycling conditions for conventional PCR and real time quantitative-PCR

From: Efficacy of zinc oxide and copper oxide nanoparticles on virulence genes of avian pathogenic E. coli (APEC) in broilers

Target gene

Primers sequences

Reverse transcription

Primary

denaturation

Amplification (40 cycles)

Reference

Secondary denaturation

Annealing

(Optics on)

Extension

ibeA

TGGAACCCGCTCGTAATATAC

65ËšC/

60 min.

95ËšC/

15 min.

95ËšC/

15 s.

60ËšC/

1 min.

72ËšC/

30 s.

[19]

CTGCCTGTTCAAGCATTGCA

hlyA

AACAAGGATAAGCACTGTTCTGGC

[21]

ACCATATAAGCGGTCATTCCCGTCA

Iss

ATCACATAGGATTCTGCCG

[22]

CAGCGGAGTATAGATGCCA

papC

GTGGCAGTATGAGTAATGACCGTTA

[23]

ATATCCTTTCTGAGGGATGCAATA

ompA

GGTGTTGCCAGTAACCGG

[19]

GGTGGTGCACTGGAG TGG

16 S rRNA

GACCTCGGTTTAGTTCACAGA

[24]

CACACGCTGACGCTGACCA