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Table 1 Donor age affected genes within chondrogenic pellets

From: Donor age effects on in vitro chondrogenic and osteogenic differentiation performance of equine bone marrow- and adipose tissue-derived mesenchymal stromal cells

CELL TYPE

GENE FUNCTION

   
 

Proliferation regulators

Signaling

Transcription factors

Extracellular matrix

AT-MSCs

Up-regulated

BARD1 (-)

BRCA1† (-)

CASP8 (-)

CLU ( +)

LOC100146270 (-)

PCNA ( +)

PDGFD ( +)

Up-regulated

MET

 

Up-regulated

DMP1

Down-regulated

CRTAC1

SMDP3†

BM-MSCs

Up-regulated

BARD1 (-)

BRCA1† (-)

CASP8 (-)

CCND1 ( +)

CDKN1A (-)

CTNNB1 ( +)

GLB1† (-)

HDGF ( +)

LOC100146270 (-)

MYC ( +)

PCNA ( +)

PHB (-)

TGFA ( +)

TP53† (-)

Up-regulated

GDF6

PHEX

Up-regulated

BMP4

BMP7

TGFB3

Up-regulated

COL4A1

DMP1

LOC100146589

Down-regulated

BCL2 ( +)

CLU ( +)

IGF1† ( +)

PDGFD ( +)

Down-regulated

ALPL†

ABI3BP

FGFR3

IGFBP5

MIA†

S100A1

TNFRSF11B

Down-regulated

BMP6

SNAI2†

Down-regulated

ACAN

CHADL

COL1A1

COL9A2

COL11A1

COL12A1

COMP

MMP13†

SMPD3†

SPARC

DFs

Down-regulated

BCL2 ( +)

CCND1 ( +)

CTGF ( +)

HGF ( +)

TP53† (-)

Down-regulated

GDF6

TIMP2

SMOC1

Down-regulated

GLI3

RUNX3

Down-regulated

ACAN

COL5A3

SMPD3†

  1. All listed genes were significantly affected by donor age within pellets made from adipose tissue (AT)- and bone marrow (BM)-derived mesenchymal stromal cells (MSC) and dermal fibroblasts (DF) from horses in five different age groups (n = 4, N = 60) after 21 days of culture in chondrogenic induction medium as determined by one-way ANOVA when p < 0.05. Up-regulated genes indicate an up-regulation in gene expression with increasing donor age. Down-regulated genes indicate a down-regulation in gene expression with increasing donor age. †: Categorized based on main function related to chondrogenesis, but could be categorized in more than one annotation category, ( +): Enhance proliferation, (-): Inhibits proliferation