Table 1 The nucleotide homology between LSDV/NMG/2020 and other Capripoxvirus gene sequences
| Â | Genbank ID | Abbreviation name | virus type | Year | Origin | Wildtype or vaccine | Identity to Inner Mongolia | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
GPCR | RPO30 | P32 | EEV | LSDV117 | |||||||
1 | KX764645.1 | Neethling-LSD_vaccine-OBP | LSDV | U | South Africa | vaccine | 98.9 | 99.7 | 99.8 | 99.8 | 98.7 |
2 | KX764644.1 | Neethling-Herbivac_vaccine | LSDV | U | South Africa | vaccine | 98.9 | 99.7 | 99.8 | 99.8 | 98.7 |
3 | KX764643.1 | SIS-Lumpyvax_vaccine | LSDV | U | South Africa | vaccine | 98.9 | 99.7 | 99.8 | 99.8 | 98.7 |
4 | AF409138.1 | Neethling_vaccine_LW_1959 | LSDV | U | South Africa | vaccine | 98.9 | 99.7 | 99.8 | 99.8 | 98.7 |
5 | MG972412.1 | Cro2016 | LSDV | U | Croatia | vaccine | 98.9 | 99.7 | 99.8 | 99.8 | 98.7 |
6 | MN072619.1 | Kenya | LSDV | 1958 | Kenya | Wild type | 99.1 | 99.2 | 99.3 | 94.1 | 100 |
7 | AF325528.1 | NI-2490 | LSDV | 1958 | Kenya | Wild type | 99.1 | 99.2 | 99.3 | 94.1 | 100 |
8 | KX683219.1 | KSGP_0240 | LSDV | 1974 | Kenya | vaccine | 99.1 | 99.2 | 99.3 | 94.1 | 100 |
9 | AF409137.1 | NW-LW | LSDV | 1999 | South Africa | Wild type | 98.1 | 99.3 | 99.3 | 94.3 | 99.6 |
10 | KX894508.1 | 155,920/2012 | LSDV | 2012 | Israel | Wild type | 98.1 | 99.3 | 99.3 | 94.1 | 99.6 |
11 | MN995838.1 | pendik | LSDV | 2014 | Turkey | Wild type | 98.1 | 99.3 | 99.3 | 94.1 | 99.6 |
12 | MH893760.2 | LSDV/Russia/Dagestan/2015 | LSDV | 2015 | Russia | Wild type | 98.1 | 99.3 | 99.3 | 94.1 | 99.6 |
13 | KY829023.3 | Evros/GR/15 | LSDV | 2015 | Greece | Wild type | 98.1 | 99.3 | 99.3 | 94 | 99.6 |
14 | KY702007.1 | SERBIA/Bujanovac/2016 | LSDV | 2016 | Serbia | Wild type | 98.1 | 99.3 | 99.3 | 94 | 99.6 |
15 | MH646674.1 | LSDV/Russia/Saratov/2017 | LSDV | 2017 | Russia | Wild type | 99 | 99 | 99.8 | 99.8 | 98.7 |
16 | MT134042.1 | LSDV/Russia/Udmurtiya/2019 | LSDV | 2019 | Russia: Udmurtiya | Wild type | 98.9 | 99.2 | 99.1 | 99.8 | 99.8 |
17 | MW452642 | LSDV/IND/ODI/30PR-LT/2019 | LSDV | 2019 | India | Wild type | 99 | / | / | / | / |
18 | MW452630 | LSDV/IND/ODI/30PR-LT/2019 | LSDV | 2019 | India | Wild type | / | 99.2 | / | / | / |
19 | MW452618 | LSDV/IND/ODI/30PR-LT/2019 | LSDV | 2019 | India | Wild type | / | / | 99.3 | / | / |
20 | MW452654 | LSDV/IND/ODI/30PR-LT/2019 | LSDV | 2019 | India | Wild type | / | / | / | 94.1 | / |
21 | MW452648 | LSDV/IND/WB/GS2-LT/2019 | LSDV | 2019 | India | Wild type | 98.9 | / | / | / | / |
22 | MW452636 | LSDV/IND/WB/GS2-LT/2019 | LSDV | 2019 | India | Wild type | / | 99.2 | / | / | / |
23 | MW452624 | LSDV/IND/WB/GS2-LT/2019 | LSDV | 2019 | India | Wild type | / | / | 99.3 | / | / |
24 | MW452660 | LSDV/IND/WB/GS2-LT/2019 | LSDV | 2019 | India | Wild type | / | / | / | 94.1 | / |
25 | MW452650 | LSDV/IND/WB/JS10-LT/2019 | LSDV | 2019 | India | Wild type | 99.1 | / | / | / | / |
26 | MW452638 | LSDV/IND/WB/JS10-LT/2019 | LSDV | 2019 | India | Wild type | / | 99.2 | / | / | / |
27 | MW452626 | LSDV/IND/WB/JS10-LT/2019 | LSDV | 2019 | India | Wild type | / | / | 99.3 | / | / |
28 | MN452662 | LSDV/IND/WB/JS10-LT/2019 | LSDV | 2019 | India | Wild type | / | / | / | 94.1 | / |
29 | MN598006.1 | LSDV/Xinjiang/2019 | LSDV | 2019 | China | Wild type | 99.9 | / | / | / | / |
30 | MN598007.1 | LSDV/Xinjiang/2019 | LSDV | 2019 | China | Wild type | / | 100 | / | / | / |
31 | MN598005.1 | LSDV/Xinjiang/2019 | LSDV | 2019 | China | Wild type | / | / | 100 | / | / |
32 | MW355944.1 | China/GD01/2020 | LSDV | 2020 | China | Wild type | 100 | 100 | 100 | 100 | 100 |
33 | MW732649.1 | LSDV/HongKong/2020 | LSDV | 2020 | China | Wild type | 100 | 100 | 100 | 99.6 | 100 |
34 | MZ577074.1 | 20L43_Ly-Quoc/VNM/20 | LSDV | 2020 | VietNam | Wild type | 100 | 100 | 100 | 100 | 100 |
35 | MN072631.1 | SPPV-Turkey vaccine | SPPV | U | Turkey | vaccine | 92.5 | 94.7 | 98 | 97.1 | 94.2 |
36 | KT438551.1 | SPPV-GL | SPPV | 2013 | China | Wild type | 93.4 | 94.9 | 98 | 97.1 | 94.2 |
37 | KT438550.1 | SPPV-GH | SPPV | 2013 | China | Wild type | 93.4 | 94.9 | 98 | 97.1 | 94.2 |
38 | AY077835.1 | GTPV-Pellor | GTPV | 2000 | Kazakhstan | Wild type | 96.3 | 98.5 | 98.3 | 97.1 | 97.1 |
39 | KC951854.1 | GTPV-FZ | GTPV | 2012 | China | Wild type | 94.6 | 98.5 | 98 | 97.3 | 96.6 |
40 | MH381810.1 | GTPV-AV41 | GTPV | 2018 | China | vaccine | 94.7 | 98.5 | 98.1 | 97.3 | 96.6 |