Table 2 The list of data filtering (%)
Library | Sample | total reads | N% > 10% | low quality | 5_adapter contamine | 3_adapter_null or insert null | with ploy A/T/G/C | clean reads |
|---|---|---|---|---|---|---|---|---|
CE | CE1 | 11,842,662 (100.00%) | 114 (0.00%) | 24,351 (0.21%) | 556 (0.00%) | 299,539 (2.53%) | 6660 (0.06%) | 11,511,442 (97.20%) |
CE2 | 10,610,508 (100.00%) | 84 (0.00%) | 21,567 (0.20%) | 628 (0.01%) | 230,486 (2.17%) | 5824 (0.05%) | 10,351,919 (97.56%) | |
CE3 | 11,478,887 (100.00%) | 70 (0.00%) | 20,039 (0.17%) | 538 (0.00%) | 201,544 (1.76%) | 5762 (0.05%) | 11,250,934 (98.01%) | |
CC | CC1 | 10,835,812 (100.00%) | 98 (0.00%) | 12,896 (0.12%) | 1523 (0.01%) | 75,483 (0.70%) | 5689 (0.05%) | 10,740,123 (99.12%) |
CC2 | 12,445,172 (100.00%) | 106 (0.00%) | 23,116 (0.19%) | 1299 (0.01%) | 282,358 (2.27%) | 8015 (0.06%) | 12,130,278 (97.47%) | |
CC3 | 11,997,798 (100.00%) | 102 (0.00%) | 21,972 (0.18%) | 679 (0.01%) | 254,882 (2.12%) | 6929 (0.06%) | 11,713,234 (97.63%) | |
CEH | CEH1 | 11,692,196 (100.00%) | 0 (0.00%) | 62,563 (0.54%) | 2126 (0.02%) | 259,645 (2.22%) | 17,540 (0.15%) | 11,350,322 (97.08%) |
CEH2 | 10,099,875 (100.00%) | 0 (0.00%) | 43,351 (0.43%) | 1199 (0.01%) | 118,709 (1.18%) | 7777 (0.08%) | 9,928,839 (98.31%) | |
CEH3 | 11,519,462 (100.00%) | 0 (0.00%) | 38,272 (0.33%) | 1456 (0.01%) | 120,667 (1.05%) | 8538 (0.07%) | 11,350,529 (98.53%) | |
CCH | CCH1 | 13,815,927 (100.00%) | 0 (0.00%) | 54,488 (0.39%) | 2241 (0.02%) | 159,117 (1.15%) | 37,801 (0.27%) | 13,562,280 (98.16%) |
CCH2 | 13,879,487 (100.00%) | 0 (0.00%) | 107,019 (0.77%) | 3208 (0.02%) | 169,015 (1.22%) | 81,076 (0.58%) | 13,519,169 (97.40%) | |
CCH3 | 10,067,608 (100.00%) | 0 (0.00%) | 41,304 (0.41%) | 1302 (0.01%) | 142,941 (1.42%) | 17,496 (0.17%) | 9,864,565 (97.98%) |