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Table 1 Summary of positive herds by date and genotyping result

From: Genotype diversity of Mycoplasma Hyopneumoniae in Chinese swine herds based on multilocus sequence typing

Herd ID Country and region of herd Date adka rpoBa tpiAa STb
H1 China, Jiangxi 2018 16 15 29 145
H2 China, Jiangsu 2018 23 59 57 128
H3 China,Shaanxi 2020 47 59 71 174
H4 China,Shaanxi 2020 47 59 71 174
H5 China,Beijing 2020 16 15 73 175
H6 China,Shandong 2018 16 60 58 129
H7 China,Shandong 2018 6 18 58 130
H8 China,Shandong 2019 16 60 58 129
H9 China,Shandong 2019 16 60 58 129
H10 China,Tianjin 2020 16 67 59 172
H11 China,Tianjin 2020 47 67 15 173
H12 China,Guangdong 2020 23 60 57 128
H13 China,Henan 2019 23 59 57 128
H14 China,Henan 2019 23 15 62 149
H15 China,Henan 2020 16 1 59 169
H16 China,Guangxi 2019 23 15 62 149
H17 China,Guangxi 2019 16 59 57 146
H18 China,Guangxi 2019 23 59 57 128
H19 China,Guangxi 2019 16 15 59 147
H20 China,Guangxi 2019 41 63 59 150
H21 China,Guangxi 2019 16 59 57 146
H22 China,Guangxi 2019 40 15 60 151
H23 China,Guangxi 2019 23 59 57 128
H24 China,Guangxi 2019 23 59 57 128
H25 China,Guangxi 2019 16 23 57 148
H26 China,Guangxi 2020 16 64 59 152
Strain 168 China,Gansu 1979 16 15 34 61
BQ14 France   10 2 1 17
Strain J UK   5 16 16 28
Strain 232 USA   11 15 15 27
Strain 7448 Brazil   13 17 19 15
Simpson’s index    0.702(CI: 0.582–0.821) 0.822(CI: 0.729–0.914) 0.834(CI: 0.741–0.927) 0.935(CI: 0.876–0.995)
  1. aRepresents the housekeeping genes and the numbers below represent the allele definitions (an identifier for every unique allele sequence);
  2. bRepresents the MLST profiles that index unique combinations of alleles