|
Herd ID
|
Country and region of herd
|
Date
|
adka
|
rpoBa
|
tpiAa
|
STb
|
|---|
|
H1
|
China, Jiangxi
|
2018
|
16
|
15
|
29
|
145
|
|
H2
|
China, Jiangsu
|
2018
|
23
|
59
|
57
|
128
|
|
H3
|
China,Shaanxi
|
2020
|
47
|
59
|
71
|
174
|
|
H4
|
China,Shaanxi
|
2020
|
47
|
59
|
71
|
174
|
|
H5
|
China,Beijing
|
2020
|
16
|
15
|
73
|
175
|
|
H6
|
China,Shandong
|
2018
|
16
|
60
|
58
|
129
|
|
H7
|
China,Shandong
|
2018
|
6
|
18
|
58
|
130
|
|
H8
|
China,Shandong
|
2019
|
16
|
60
|
58
|
129
|
|
H9
|
China,Shandong
|
2019
|
16
|
60
|
58
|
129
|
|
H10
|
China,Tianjin
|
2020
|
16
|
67
|
59
|
172
|
|
H11
|
China,Tianjin
|
2020
|
47
|
67
|
15
|
173
|
|
H12
|
China,Guangdong
|
2020
|
23
|
60
|
57
|
128
|
|
H13
|
China,Henan
|
2019
|
23
|
59
|
57
|
128
|
|
H14
|
China,Henan
|
2019
|
23
|
15
|
62
|
149
|
|
H15
|
China,Henan
|
2020
|
16
|
1
|
59
|
169
|
|
H16
|
China,Guangxi
|
2019
|
23
|
15
|
62
|
149
|
|
H17
|
China,Guangxi
|
2019
|
16
|
59
|
57
|
146
|
|
H18
|
China,Guangxi
|
2019
|
23
|
59
|
57
|
128
|
|
H19
|
China,Guangxi
|
2019
|
16
|
15
|
59
|
147
|
|
H20
|
China,Guangxi
|
2019
|
41
|
63
|
59
|
150
|
|
H21
|
China,Guangxi
|
2019
|
16
|
59
|
57
|
146
|
|
H22
|
China,Guangxi
|
2019
|
40
|
15
|
60
|
151
|
|
H23
|
China,Guangxi
|
2019
|
23
|
59
|
57
|
128
|
|
H24
|
China,Guangxi
|
2019
|
23
|
59
|
57
|
128
|
|
H25
|
China,Guangxi
|
2019
|
16
|
23
|
57
|
148
|
|
H26
|
China,Guangxi
|
2020
|
16
|
64
|
59
|
152
|
|
Strain 168
|
China,Gansu
|
1979
|
16
|
15
|
34
|
61
|
|
BQ14
|
France
| |
10
|
2
|
1
|
17
|
|
Strain J
|
UK
| |
5
|
16
|
16
|
28
|
|
Strain 232
|
USA
| |
11
|
15
|
15
|
27
|
|
Strain 7448
|
Brazil
| |
13
|
17
|
19
|
15
|
|
Simpson’s index
| | |
0.702(CI: 0.582–0.821)
|
0.822(CI: 0.729–0.914)
|
0.834(CI: 0.741–0.927)
|
0.935(CI: 0.876–0.995)
|
- aRepresents the housekeeping genes and the numbers below represent the allele definitions (an identifier for every unique allele sequence);
- bRepresents the MLST profiles that index unique combinations of alleles
