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Table 6 Overlapping differentially expressed genes for the effect of Isolate between the NanoString and RNA-seq data analyses without accounting for cell enrichments

From: Gene expression in tonsils in swine following infection with porcine reproductive and respiratory syndrome virus

Gene name

NanoString data

RNA-seq data

log2FCa

q-value

log2FC

q-value

CDC25B

0.42

3.96E-03

0.48

0.03

ETS1

0.28

0.08

0.45

0.05

FN1

0.46

2.83E-04

0.43

0.01

IFIT2

0.25

0.01

0.35

0.04

IKBKE

0.25

0.02

0.35

0.02

ITK

0.29

0.01

0.31

0.04

JAK3

0.22

0.02

0.29

0.07

LAT

0.37

1.43E-05

0.29

0.08

LCP2

0.29

2.65E-06

0.25

0.03

LYZ

0.36

2.43E-04

0.24

0.07

PIK3CG

−1.28

1.99E-03

−1.08

0.04

TYK2

−0.59

0.04

−1.49

0.01

  1. a Log fold change of KS06/NVSL
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BMC Veterinary Research

ISSN: 1746-6148

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