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Table 1 Nucleotide identities (%) and amino-acid similarities (% in brackets) of partial S1 gene of ten Syrian IBV isolates with reference IBV strains

From: Molecular characterization of isolated infectious bronchitis viruses from affected vaccinated broiler flocks in Syria

   1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
1 Ha1Tb(MT010135)a - 99.7
(99.0)
99.7
(99.0)
99.7
(95.2)
99.6
(100)
99.4
(98.1)
100.0
(100)
96.8
(93.3)
100.0
(100)
99.4
(100)
99.4 (98.1) 89.5
(87.5)
99.0
(97.1)
82.3
(83.7)
82.5
(82.7)
81.8
(79.8)
81.8
(79.8)
2 T1Tb(MT010132)a   - 99.3
(98.0)
99.7
(99.0)
99.3
(98.9)
99.0
(97.0)
99.7
(99.0)
97.0
(93.3)
99.7
(99.0)
99.0
(99.0)
99.3 (98.0) 89.0
(86.9)
99.0
(97.0)
81.7
(81.8)
81.9
(80.8)
80.9
(77.8)
80.9
(77.8)
3 Ho1Tb(MT010133)a    - 99.7
(99.0)
99.3
(98.8)
99.0
(97.0)
99.7
(99.0)
97.3
(94.9)
99.7
(99.0)
99.0
(99.0)
99.3 (98.0) 89.7
(87.9)
99.0
(97.0)
81.4
(82.8)
82.1
(81.8)
81.1
(78.8)
81.1
(78.8)
4 T2Kb(MT010131)a     - 99.6
(100)
99.0
(93.3)
99.7
(95.2)
96.5
(89.4)
99.7
(95.2)
99.0
(95.2)
99.0 (94.2) 89.2
(83.7)
98.7
(93.3)
82.0
(78.8)
82.2
(77.9)
81.6
(75.0)
81.6
(75.0)
5 T3Tb(MT010130)a      - 98.9
(97.8)
99.6
(100
96.4
(93.4)
99.6
(100)
99.3
(100)
98.6 (98.9) 89.9
(89.5)
98.3
(97.9)
83.5
(84.0)
83.3
(83.2)
81.5
(80.0)
81.4
(79.6)
6 T4Tb(MT010129)a       - 99.4
(98.1)
96.2
(91.3)
99.4
(98.1)
98.7
(98.1)
98.7
( 96.2)
88.9
(85.6)
98.4
(95.2)
82.3
(83.7)
82.5
(82.7)
81.2
(77.9)
81.2
(77.9)
7 T5Tb(MT010128)a        - 96.8
(93.3)
100.0
(100)
99.4
(100)
99.4 (98.1) 89.5
(87.5)
99.0
(97.1)
82.3
(83.7)
82.5
(82.7)
81.8
(79.8)
81.8
(79.8)
8 Ha2Tb(MT010134)*         - 96.8
(93.3)
96.2
(93.3)
97.5 (95.2) 88.2
(85.6)
97.1
(94.2)
80.6
(80.8)
82.8
(82.7)
80.9
(77.9)
80.9
(77.9)
9 T6Kb(MT010127)a          - 99.4
(100)
99.1 (98.1) 89.3
(87.7)
98.7
(97.2)
82.5
(84.0)
82.7
(83.0)
82.1
(80.2)
82.1
(80.2)
10 T7Kb(MT010126)a           - 98.7 (98.1) 89.5
(87.5)
98.4
(79.8)
82.3
(83.7)
81.8
(82.7)
81.8
(79.8)
81.8
(79.8)
11 IS/1494/06 ( EU780077)a            - 88.3
(88.8)
99.5
(98.1)
82.3
(82.2)
79.1
(83.2)
79.9
(78.5)
81.4
(78.5)
12 IS/885 (AY279533.1)a             - 91.1
(88.3)
82.8
(80.6)
79.0
(81.1)
78.6
(76.6)
80.7
(76.6)
13 Egypt/Beni-Suef/01(JX174183)a              - 81.6
(81.7)
80.5
(82.5)
81.4
(79.1)
80.9
(78.5)
14 MHW-QX-KDL-3-2012 (MH671340.1)a               - 82.0
(84.3)
80.2
(73.6)
78.6
(74.8)
15 strain 4/91 ( KF377577.1)a                - 77.3
(74.6)
77.6
(73.8)
16 H120 ( KF188436.1)a                 - 100
(100)
17 Ma5 ( KU736747 )a                  -
  1. aGenBank accession numbers
  2. bSequenced in this study