Table 1 African swine fever virus (ASFV) strains circulating in Malawi together with genotype II ASFV previously described in Tanzania, Zambia, Mozambique,Zimbabwe, Georgia and China, sharing high nucleotide identity with strains that caused outbreak in Malawi during September 2019
From: Genetic profile of African swine fever virus responsible for the 2019 outbreak in northern Malawi
Isolate | Host species | Year of isolation | Town/district | Country | Accession number | P72 genotype | Reference |
|---|---|---|---|---|---|---|---|
MAL 2011/5 | Domestic pig | 2011 | NK1 | Malawi | KC835275 | II | Unpublished |
MAL2011 4 | Domestic pig | 2011 | NK | Malawi | JX524217 | II | Unpublished |
MAL/2011/3 | Domestic pig | 2011 | NK | Malawi | KC662378 | II | Unpublished |
Mal 2011/01 | Domestic pig | 2011 | NK | Malawi | JX294724 | II | Unpublished |
MAL/19/Karonga_1 | Domestic pig | 2019 | Karonga district | Malawi | MN755863 | II | This study |
MAL/19/Karonga_2 | Domestic pig | 2019 | Karonga district | Malawi | MN755864 | II | This study |
MAL/19/Karonga_3 | Domestic pig | 2019 | Karonga district | Malawi | MN755865 | II | This study |
MAL/19/Karonga_4 | Domestic pig | 2019 | Karonga district | Malawi | MN755866 | II | This study |
TAN/12/Iringa | Domestic pig | 2012 | Iringa | Tanzania | KF834193 | II | [34] |
TAN/10/Kyela | Domestic pig | 2010 | Kyela | Tanzania | JX391987 | II | [35] |
ZAM/13/Mbala | Domestic pig | 2013 | Mbala | Zambia | LC174750 | II | [12] |
ZAM/2017/Mbala/1 | Domestic pig | 2017 | Mbala | Zambia | LC322016 | II | [36] |
ZIM/2015/01 | Domestic pig | 2015 | Mashonaland | Zimbabwe | KX090923 | II | [37] |
MOZ_5/2006 | Soft tick | 2006 | Gorongosa National Park | Mozambique | KY353984 | II | [14] |
Georgia 2007/1 | Domestic pig | 2007 | Caucasus Region | Georgia | NC_044959 | II | [38] |
China 2018/1 | Domestic pig | 2018 | Shenbei | China | MH722357 | II | [20] |
Tengani | Warthog | 1960 | Tengani | Malawi | AF301541 | V | [16] |
MAL/2002/1 | Domestic pig | 2002 | Mpemba Camp | Malawi | AY494553 | V | [27] |
Malawi/1978 | Domestic pig | 1978 | NK | Malawi | AF270707 | VIII | [16] |
ZAM/2/84 | Domestic pig | 1984 | NK | Malawi | AF449471 | VIII | [16] |
Dezda | Domestic pig | 1986 | Chilikum-Wera, Dedza | Malawi | AF449479 | VIII | [16] |
NDA/1/90 | Domestic pig | 1990 | Nadula | Malawi | AF449473 | VIII | [16] |
BAN/911 | Domestic pig | 1991 | Bangula, Lower Shire | Malawi | AY351501 | VIII | [27] |
DED/891 | Domestic pig | 1989 | Dedza District | Malawi | AY351502 | VIII | [27] |
DED/911 | Domestic pig | 1991 | Mtenden Campus, Dedza | Malawi | AY351503 | VIII | [27] |
DOWA | Domestic pig | 1986 | Moya, Dowa | Malawi | AY351509 | VIII | [27] |
KAC/912 | Domestic pig | 1991 | Kachendere Seminary | Malawi | AY351504 | VIII | [27] |
LIL/891 | Domestic pig | 1989 | Lilongwe District | Malawi | AY351505 | VIII | [27] |
LIL/901 | Domestic pig | 1990 | Kafere diptank, Lilongwe | Malawi | AY351510 | VIII | [27] |
MCH/891 | Domestic pig | 1989 | Kachebere Seminary | Malawi | AY351506 | VIII | [27] |
MCH/893 | Domestic pig | 1989 | Lilongwe District | Malawi | AY351507 | VIII | [27] |
MCHINJI/075 | Domestic pig | 1987 | Mchinji | Malawi | AY351508 | VIII | [27] |
NGE/921 | Domestic pig | 1992 | Karonga District | Malawi | AY351544 | VIII | [27] |
SAL/921 | Domestic pig | 1992 | Salima District | Malawi | AY351546 | VIII | [27] |
SIY91/2 | Domestic pig | 1991 | Sinyala diptank, Lilongwe | Malawi | AY351566 | VIII | [27] |
THY/901 | Domestic pig | 1990 | Comforzi farm, Thyolo District | Malawi | AY351545 | VIII | [27] |
Malawi Lil-20/1 (1983) | Tick (pig) | 1983 | Chalaswa | Malawi | AY261361 | VIII | [30] |
MZI/921 | Domestic pig | 1992 | Euthini, Mzinda District, | Malawi | AY351543 | XII | [27] |