Fig. 1
From: Porcine circovirus type 2 (PCV2) genotyping in Austrian pigs in the years 2002 to 2017
Maximum likelihood tree constructed with 105 capsid protein gene sequences. The tree is constructed from sequences of the present study (acc. no. MN150551-MN150684) and 32 representative PCV2 sequences of different genotypes (PCV2a labeled blue: acc. no. AF201305, AY424401, EU148507, EU386606, FJ483938, KP231099; PCV2b labeled red: acc. no. AY256457, DQ218419, EU545549, HQ591367, JN382175, KY806030, KY806064; PCV2c labeled turquoise: acc. no. EU148503; PCV2d labeled green: acc. no. JN006448, JF683408, JX912915; PCV2e labeled violet: acc. no. KT795288; PCV2f labeled orange: acc. no. HQ591381, KT369067, LC004746, LC004749, LC008134, MG739618; PCV2g labeled pink: acc. no. AY713470, DQ151643, JX948768, KP420197; PCV2h labeled brown: GQ449669, KC514969, KM042403, MH465473). NC_001792 served as outgroup. The tree with the highest log likelihood (− 3808.33) is shown. The percentage of trees in which the associated taxa clustered together is shown next to the branches (1000 replicates, in %)