Table 1 Geographic origin and amplified sequence size of target genes from clinical samples in this study
No | Name of strain | Collection date | Area | ORF5(bp)/accession number | NSP2(bp)/accession number |
|---|---|---|---|---|---|
1 | GXBH1310b | 2013.10 | Baihai | 603/MG604994 | NA |
2 | GXBH1311a | 2013.11 | Baihai | 603/MG604995 | NA |
3 | GXBH1311b | 2013.11 | Baihai | 603/MG605048 | NA |
4 | GXBH1404 | 2014.04 | Baihai | 603/MG605047 | 1322/MG604959 |
5 | GXBS1310 | 2013.10 | Baise | 603/MG605046 | 1682 /MG604960 |
6 | GXBS1401a | 2014.01 | Baise | 603/MG605045 | 1679 /MG604961 |
7 | GXBS1410a | 2014.10 | Baise | 603/MG605043 | 1682 /MG604962 |
8 | GXBS1410b | 2014.10 | Baise | 603/MG605042 | 1682 / MG604963 |
9 | GXBS1410c | 2014.10 | Baise | 603/MG605041 | 1682 / MG604964 |
10 | GXGG1304 | 2013.04 | Guigang | 603/MG605040 | NA |
11 | GXGG1305a | 2013.05 | Guigang | 603/MG605039 | NA |
12 | GXGG1305b | 2013.05 | Guigang | 603/MG605038 | NA |
13 | GXGG1306 | 2013.06 | Guigang | 603/MG605037 | 1682 / MG604965 |
14 | GXGL1305a | 2013.05 | Guilin | 603/MG605036 | NA |
15 | GXGL1305b | 2013.05 | Guilin | 603/MG605035 | NA |
16 | GXHZ1401 | 2014.01 | Hezhou | 603/MG604999 | 1322/MG604966 |
17 | GXLB1403 | 2014.03 | Laibin | 603/MG605034 | NA |
18 | GXLZ1405 | 2014.05 | Laibin | 603/MG605033 | 1682/MG604968 |
19 | GXLZ1306b | 2013.06 | Liuzhou | 603/MG605032 | 1682/MG604967 |
20 | GXLZ1306c | 2013.06 | Liuzhou | 603/MG605031 | NA |
21 | GXNN1304 | 2013.04 | Nanning | 603/MG605030 | 1682/MG604969 |
22 | GXNN1305a | 2013.05 | Nanning | 603/MG605029 | 1682/MG604970 |
23 | GXNN1305b | 2013.05 | Nanning | 603/MG605028 | 1682/MG604971 |
24 | GXNN1305c | 2013.05 | Nanning | 603/MG605027 | 1682/MG604972 |
25 | GXNN1305d | 2013.05 | Nanning | 603/MG605026 | NA |
26 | GXNN1305e | 2013.05 | Nanning | 603/MG605025 | 1682/MG604973 |
27 | GXNN1307 | 2013.07 | Nanning | 603/MG605024 | NA |
28 | GXNN1309a | 2013.09 | Nanning | 603/MG605023 | NA |
29 | GXNN1310a | 2013.10 | Nanning | 603/MG605022 | NA |
30 | GXNN1310b | 2013.10 | Nanning | 603/MG605021 | NA |
31 | GXNN1310c | 2013.10 | Nanning | 603/MG605020 | NA |
33 | GXNN1310f | 2013.10 | Nanning | 603/ MG605019 | NA |
34 | GXNN1312c | 2013.12 | Nanning | 603/MG605018 | 1682/MG604974 |
35 | GXNN1396 | 2013.09 | Nanning | 603/MG605049 | 1626/MG604975 |
36 | GXNN1407a | 2014.07 | Nanning | 603/MG604998 | 1685/MG604976 |
37 | GXNN1407b | 2014.07 | Nanning | 603/MG604997 | 1682/MG604977 |
38 | GXNN1409 | 2014.09 | Nanning | 603/MG604996 | 1682/MG604978 |
39 | GXNN1410a | 2014.10 | Nanning | 603/MG605017 | 1682/MG604979 |
40 | GXQZ1408 | 2014.08 | Qinzhou | 603/MG605016 | NA |
41 | GXWZ1301a | 2013.01 | Wuzhou | 603/MG605015 | 1682/MG604981 |
42 | GXWZ1410a | 2014.10 | Wuzhou | 603/MG605014 | NA |
43 | GXWZ1410b | 2014.10 | Wuzhou | 603/MG605013 | 1682/MG604982 |
44 | GXWZ1410c | 2014.10 | Wuzhou | 603/MG605012 | NA |
45 | GXYL1304 | 2013.04 | Yulin | 603/MG605011 | 1682/MG604983 |
46 | GXYL1307a | 2013.07 | Yulin | 603/MG605010 | 1682/MG604984 |
47 | GXYL1308a | 2013.08 | Yulin | 603/MG605009 | NA |
48 | GXYL1308b | 2013.08 | Yulin | 603MG605008/ | 1682/MG604985 |
49 | GXYL1310 | 2013.10 | Yulin | 603/MG605007 | 1322/MG604986 |
50 | GXYL1403a | 2014.03 | Yulin | 603/MG605006 | 1722/MG604987 |
51 | GXYL1403b | 2014.03 | Yulin | 603/MG605005 | 1682/MG604988 |
52 | GXYL1403c | 2014.03 | Yulin | 603/MG605004 | NA |
53 | GXYL1403d | 2014.03 | Yulin | 603/MG605003 | 1682/MG604989 |
54 | GXYL1403e | 2014.03 | Yulin | 603/MG605002 | 1400/MG604990 |
55 | GXYL1405 | 2014.05 | Yulin | 603/MG605001 | 1682/MG604992 |
56 | GXYL1407 | 2014.07 | Yulin | 603/MG605000 | 1682/MG604993 |