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Table 1 The designations, clinical signs, genotypes, GenBank accession numbers and other characteristics of the PCV2 genomes sequenced in this study

From: Genetic analysis of porcine circovirus type 2 (PCV2) strains between 2002 and 2016 reveals PCV2 mutant predominating in porcine population in Guangxi, China

  Designation Geographic origin Clinical history Tissue Year of the collection Genotype GenBank No Genome size (nt) ORF2
1 GXNN0201 Nanning PMWS Inguinal lymph node 2002 PCV2b-1B MH465415 1767 702
2 GXGG0201 Guigang PMWS Inguinal lymph node 2002 PCV2e MH465483 1768 702
3 GXNN0202 Nanning PMWS Inguinal lymph node 2002 PCV2b-1A MH465416 1767 702
4 GXNN0203 Nanning PMWS Inguinal lymph node 2002 PCV2b-1B MH465417 1767 702
5 GXBH0301 Beihai PMWS Inguinal lymph node 2003 PCV2b-1A MH481748 1767 702
6 GXNN0301 Nanning PMWS Inguinal lymph node 2003 PCV2d MH465457 1767 705
7 GXYL0601 Yulin PMWS Inguinal lymph node 2006 PCV2b-1B MH465433 1767 702
8 GXWZ0602 Wuzhou PMWS Inguinal lymph node 2006 PCV2b-1A MH465432 1767 702
9 GXNN0603 Nanning PMWS Inguinal lymph node 2006 PCV2b-1B MH465418 1767 702
10 GXHZ0708 Hezhou PMWS Inguinal lymph node 2007 PCV2b-1B MH465407 1767 702
11 GXHZ0709 Hezhou PMWS Inguinal lymph node 2007 PCV2b-1B MH465408 1767 702
12 GXHZ0710 Hezhou PMWS Inguinal lymph node 2007 PCV2b-1A MH465409 1767 702
13 GXBH0801 Beihai PMWS Inguinal lymph node 2008 PCV2b-1B MH465398 1767 702
14 GXLB0802 Wuxuan PMWS Inguinal lymph node 2008 PCV2d MH465449 1767 705
15 GXGG0802 Guigang PMWS Inguinal lymph node 2008 PCV2b-1B MH465404 1767 702
16 GXNN0803 Nanning PMWS Inguinal lymph node 2008 PCV2b-1A MH465419 1767 702
17 GXNN0804 Nanning PMWS Inguinal lymph node 2008 PCV2d MH465458 1767 705
18 GXCZ0805 Chongzuo PMWS Inguinal lymph node 2008 PCV2b-1B MH465402 1767 702
19 GXGG0805 Guigang PMWS Inguinal lymph node 2008 PCV2d MH465444 1767 705
20 GXNN0806 Nanning PMWS Inguinal lymph node 2008 PCV2b-1B MH465420 1767 702
21 GXNN0901a Nanning No signs Inguinal lymph node 2009 PCV2b-1B MH465421 1767 702
22 GXNN0901b Nanning No signs Inguinal lymph node 2009 PCV2d MH465459 1767 705
23 GXNN0902 Nanning No signs Inguinal lymph node 2009 PCV2b-1B MH465422 1767 702
24 GXNN0904 Nanning Abortion Aborted fetus 2009 PCV2d MH465460 1767 705
25 GXBH1008 Beihai PMWS Inguinal lymph node 2010 PCV2b-1B MH465399 1767 702
26 GXLZ1103a Liuzhou No signs Inguinal lymph node 2011 PCV2b-1B MH465414 1767 702
27 GXLZ1103b Liuzhou No signs Inguinal lymph node 2011 PCV2d MH465452 1767 705
28 GXLZ1208a Liuzhou No signs Inguinal lymph node 2012 PCV2h MH465453 1767 705
29 GXYL1208 Yulin No signs Inguinal lymph node 2012 PCV2h MH465473 1767 705
30 GXLB1212a Laibin No signs Inguinal lymph node 2012 PCV2e MH465485 1768 702
31 GXLB1212b Laibin No signs Inguinal lymph node 2012 PCV2d MH465450 1767 705
32 GXLB1212c Laibin No signs Inguinal lymph node 2012 PCV2e MH465486 1768 702
33 GXGG1212 Guigang No signs Inguinal lymph node 2012 PCV2d MH465405 1768 702
34 GXLZ1208b Liuzhou No signs Inguinal lymph node 2012 PCV2d MH465454 1767 705
35 GXLZ1208c Liuzhou No signs Inguinal lymph node 2012 PCV2d MH465455 1767 705
36 GXGG1208 Guigang PMWS Inguinal lymph node 2012 PCV2e MH465484 1768 702
37 GXNN1209a Nanning PMWS Inguinal lymph node 2012 PCV2b-1B MH465423 1767 702
38 GXNN1209b Nanning PMWS Inguinal lymph node 2012 PCV2b-1B MH465424 1767 702
39 GXYL1304 Yulin PMWS Inguinal lymph node 2013 PCV2b-1B MH465434 1767 702
40 GXNN1304a Nanning PMWS Inguinal lymph node 2013 PCV2d MH465461 1767 705
41 GXNN1304b Nanning PMWS Inguinal lymph node 2013 PCV2b-1B MH465425 1767 702
42 GXGG1305 Guigang PMWS Inguinal lymph node 2013 PCV2b-1B MH465406 1767 702
43 GXYL1305 Yulin PMWS Inguinal lymph node 2013 PCV2b-1B MH465435 1767 702
44 GXGG1306 Guigang PMWS Inguinal lymph node 2013 PCV2d MH465445 1767 705
45 GXYL1307a Yulin PMWS Inguinal lymph node 2013 PCV2d MH465474 1767 705
46 GXYL1307b Yulin PMWS Inguinal lymph node 2013 PCV2e MH465490 1768 702
47 GXYL1307c Yulin PMWS Inguinal lymph node 2013 PCV2d MH465475 1767 705
48 GXYL1307d Yulin PMWS Inguinal lymph node 2013 PCV2b-1B MH465436 1767 702
49 GXYL1310 Yulin PMWS Inguinal lymph node 2013 PCV2b-1B MH465437 1767 702
50 GXNN1312 Nanning PMWS Inguinal lymph node 2013 PCV2b-1B MH465426 1767 702
51 GXGG1312a Guigang PMWS Inguinal lymph node 2013 PCV2d MH465446 1767 705
52 GXGG1312b Guigang PMWS Inguinal lymph node 2013 PCV2d MH465447 1767 705
53 GXBS1401 Baise PMWS Inguinal lymph node 2014 PCV2d MH465439 1767 705
54 GXYL1401 Yulin PMWS Inguinal lymph node 2014 PCV2d MH465476 1767 705
55 GXYL1403a Yulin PMWS Inguinal lymph node 2014 PCV2d MH465477 1767 705
56 GXYL1403b Yulin PMWS Inguinal lymph node 2014 PCV2d MH465478 1767 705
57 GXYL1405 Yulin PMWS Inguinal lymph node 2014 PCV2d MH465479 1767 705
58 GXLB1405 Laibin PMWS Inguinal lymph node 2014 PCV2b-1B MH465410 1767 702
59 GXLZ1406 Liuzhou PMWS Inguinal lymph node 2014 PCV2d MH465456 1767 705
60 GXNN1406 Nanning PMWS Inguinal lymph node 2014 PCV2b-1B MH465427 1767 702
61 GXYL1408 Yulin PMWS Inguinal lymph node 2014 PCV2e MH465491 1767 705
62 GXNN1409a Nanning PMWS Inguinal lymph node 2014 PCV2d MH465462 1767 705
63 GXNN1409b Nanning PMWS Inguinal lymph node 2014 PCV2e MH465487 1768 702
64 GXYL1409 Yulin PMWS Inguinal lymph node 2014 PCV2b-1B MH465438 1767 702
65 GXYL1410 Yulin PMWS Inguinal lymph node 2014 PCV2d MH465480 1767 705
66 GXNN1410a Nanning PMWS Inguinal lymph node 2014 PCV2d MH465463 1767 705
67 GXCZ1410 Chongzuo PMWS Inguinal lymph node 2014 PCV2b-1B MH465403 1767 702
68 GXNN1410b Nanning PMWS Inguinal lymph node 2014 PCV2e MH465488 1768 702
69 GXNN1410c Nanning PMWS Inguinal lymph node 2014 PCV2d MH465464 1767 705
70 GXBS1410 Baise PMWS Inguinal lymph node 2014 PCV2d MH465440 1767 705
71 GXFC1501 Fangchenggang PMWS lymph node 2015 PCV2d MH465443 1767 705
72 GXNN1501 Nanning No signs Lung, spleen, lymph node 2015 PCV2d MH465465 1767 705
73 GXNN1503 Nanning No signs Lung, spleen, lymph node 2015 PCV2d MH465466 1767 705
74 GXNN1504 Nanning No signs Lung, spleen, lymph node 2015 PCV2d MH465467 1767 705
75 GXCZ1510a Chongzuo PMWS lymph node 2015 PCV2d MH465441 1767 705
76 GXCZ1510b Chongzuo PMWS lymph node 2015 PCV2d MH465442 1767 705
77 GXHC1511 Hechi No signs Lung, spleen, lymph node 2015 PCV2d MH465448 1767 705
78 GXNN1511 Nanning No signs Lung, spleen, lymph node 2015 PCV2b-1B MH465428 1767 702
79 GXLB1511a Laibin No signs Lung, spleen, lymph node 2015 PCV2b-1B MH465411 1767 702
80 GXLB1511b Laibin No signs Lung, spleen, lymph node 2015 PCV2b-1B MH465412 1767 702
81 GXLB1511c Laibin PMWS Lung, spleen, lymph node 2015 PCV2b-1B MH465413 1767 702
82 GXYL1512 Laibin PMWS Lung, spleen, lymph node 2015 PCV2d MH465481 1767 705
83 GXQZ1601 Qinzhou PMWS lymph node 2016 PCV2d MH465472 1767 705
84 GXNN1602 Nanning PMWS Lung, lymph node 2016 PCV2d MH465468 1767 705
85 GXNN1603a Nanning PMWS lymph node 2016 PCV2d MH465469 1767 705
86 GXNN1603b Nanning PMWS Lung 2016 PCV2b-1B MH465429 1767 702
87 GXNN1604a Nanning No signs Lung, spleen, lymph node 2016 PCV2a MH465489 1768 702
88 GXNN1604b Nanning No signs Lung, spleen, lymph node 2016 PCV2b-1B MH465430 1767 702
89 GXLB1606 Laibin PMWS Lung, spleen, lymph node 2016 PCV2d MH465451 1767 705
90 GXBS1607a Baise PMWS Lung, spleen, lymph node 2016 PCV2e MH465400 1767 702
91 GXBS1607b Baise PMWS Lung, spleen, lymph node 2016 PCV2e MH465401 1767 702
92 GXYL1607 Yulin PMWS Lung, spleen, lymph node 2016 PCV2d MH465482 1767 705
93 GXNN1612a Nanning PMWS spleen 2016 PCV2d MH465470 1767 705
94 GXNN1612b Nanning No signs lymph node 2016 PCV2d MH465471 1767 705
95 GXNN1612c Nanning No signs Lung, spleen, lymph node 2016 PCV2b-1B MH465431 1767 702