Genetic analysis of porcine circovirus type 2 (PCV2) strains between 2002 and 2016 reveals PCV2 mutant predominating in porcine population in Guangxi, China

Yao, Jing; Qin, Yanran; Zeng, Yue; Ouyang, Kang; Chen, Ying; Huang, Weijian; Wei, Zuzhang

doi:10.1186/s12917-019-1859-z

Table 1 The designations, clinical signs, genotypes, GenBank accession numbers and other characteristics of the PCV2 genomes sequenced in this study

From: Genetic analysis of porcine circovirus type 2 (PCV2) strains between 2002 and 2016 reveals PCV2 mutant predominating in porcine population in Guangxi, China

	Designation	Geographic origin	Clinical history	Tissue	Year of the collection	Genotype	GenBank No	Genome size (nt)	ORF2
1	GXNN0201	Nanning	PMWS	Inguinal lymph node	2002	PCV2b-1B	MH465415	1767	702
2	GXGG0201	Guigang	PMWS	Inguinal lymph node	2002	PCV2e	MH465483	1768	702
3	GXNN0202	Nanning	PMWS	Inguinal lymph node	2002	PCV2b-1A	MH465416	1767	702
4	GXNN0203	Nanning	PMWS	Inguinal lymph node	2002	PCV2b-1B	MH465417	1767	702
5	GXBH0301	Beihai	PMWS	Inguinal lymph node	2003	PCV2b-1A	MH481748	1767	702
6	GXNN0301	Nanning	PMWS	Inguinal lymph node	2003	PCV2d	MH465457	1767	705
7	GXYL0601	Yulin	PMWS	Inguinal lymph node	2006	PCV2b-1B	MH465433	1767	702
8	GXWZ0602	Wuzhou	PMWS	Inguinal lymph node	2006	PCV2b-1A	MH465432	1767	702
9	GXNN0603	Nanning	PMWS	Inguinal lymph node	2006	PCV2b-1B	MH465418	1767	702
10	GXHZ0708	Hezhou	PMWS	Inguinal lymph node	2007	PCV2b-1B	MH465407	1767	702
11	GXHZ0709	Hezhou	PMWS	Inguinal lymph node	2007	PCV2b-1B	MH465408	1767	702
12	GXHZ0710	Hezhou	PMWS	Inguinal lymph node	2007	PCV2b-1A	MH465409	1767	702
13	GXBH0801	Beihai	PMWS	Inguinal lymph node	2008	PCV2b-1B	MH465398	1767	702
14	GXLB0802	Wuxuan	PMWS	Inguinal lymph node	2008	PCV2d	MH465449	1767	705
15	GXGG0802	Guigang	PMWS	Inguinal lymph node	2008	PCV2b-1B	MH465404	1767	702
16	GXNN0803	Nanning	PMWS	Inguinal lymph node	2008	PCV2b-1A	MH465419	1767	702
17	GXNN0804	Nanning	PMWS	Inguinal lymph node	2008	PCV2d	MH465458	1767	705
18	GXCZ0805	Chongzuo	PMWS	Inguinal lymph node	2008	PCV2b-1B	MH465402	1767	702
19	GXGG0805	Guigang	PMWS	Inguinal lymph node	2008	PCV2d	MH465444	1767	705
20	GXNN0806	Nanning	PMWS	Inguinal lymph node	2008	PCV2b-1B	MH465420	1767	702
21	GXNN0901a	Nanning	No signs	Inguinal lymph node	2009	PCV2b-1B	MH465421	1767	702
22	GXNN0901b	Nanning	No signs	Inguinal lymph node	2009	PCV2d	MH465459	1767	705
23	GXNN0902	Nanning	No signs	Inguinal lymph node	2009	PCV2b-1B	MH465422	1767	702
24	GXNN0904	Nanning	Abortion	Aborted fetus	2009	PCV2d	MH465460	1767	705
25	GXBH1008	Beihai	PMWS	Inguinal lymph node	2010	PCV2b-1B	MH465399	1767	702
26	GXLZ1103a	Liuzhou	No signs	Inguinal lymph node	2011	PCV2b-1B	MH465414	1767	702
27	GXLZ1103b	Liuzhou	No signs	Inguinal lymph node	2011	PCV2d	MH465452	1767	705
28	GXLZ1208a	Liuzhou	No signs	Inguinal lymph node	2012	PCV2h	MH465453	1767	705
29	GXYL1208	Yulin	No signs	Inguinal lymph node	2012	PCV2h	MH465473	1767	705
30	GXLB1212a	Laibin	No signs	Inguinal lymph node	2012	PCV2e	MH465485	1768	702
31	GXLB1212b	Laibin	No signs	Inguinal lymph node	2012	PCV2d	MH465450	1767	705
32	GXLB1212c	Laibin	No signs	Inguinal lymph node	2012	PCV2e	MH465486	1768	702
33	GXGG1212	Guigang	No signs	Inguinal lymph node	2012	PCV2d	MH465405	1768	702
34	GXLZ1208b	Liuzhou	No signs	Inguinal lymph node	2012	PCV2d	MH465454	1767	705
35	GXLZ1208c	Liuzhou	No signs	Inguinal lymph node	2012	PCV2d	MH465455	1767	705
36	GXGG1208	Guigang	PMWS	Inguinal lymph node	2012	PCV2e	MH465484	1768	702
37	GXNN1209a	Nanning	PMWS	Inguinal lymph node	2012	PCV2b-1B	MH465423	1767	702
38	GXNN1209b	Nanning	PMWS	Inguinal lymph node	2012	PCV2b-1B	MH465424	1767	702
39	GXYL1304	Yulin	PMWS	Inguinal lymph node	2013	PCV2b-1B	MH465434	1767	702
40	GXNN1304a	Nanning	PMWS	Inguinal lymph node	2013	PCV2d	MH465461	1767	705
41	GXNN1304b	Nanning	PMWS	Inguinal lymph node	2013	PCV2b-1B	MH465425	1767	702
42	GXGG1305	Guigang	PMWS	Inguinal lymph node	2013	PCV2b-1B	MH465406	1767	702
43	GXYL1305	Yulin	PMWS	Inguinal lymph node	2013	PCV2b-1B	MH465435	1767	702
44	GXGG1306	Guigang	PMWS	Inguinal lymph node	2013	PCV2d	MH465445	1767	705
45	GXYL1307a	Yulin	PMWS	Inguinal lymph node	2013	PCV2d	MH465474	1767	705
46	GXYL1307b	Yulin	PMWS	Inguinal lymph node	2013	PCV2e	MH465490	1768	702
47	GXYL1307c	Yulin	PMWS	Inguinal lymph node	2013	PCV2d	MH465475	1767	705
48	GXYL1307d	Yulin	PMWS	Inguinal lymph node	2013	PCV2b-1B	MH465436	1767	702
49	GXYL1310	Yulin	PMWS	Inguinal lymph node	2013	PCV2b-1B	MH465437	1767	702
50	GXNN1312	Nanning	PMWS	Inguinal lymph node	2013	PCV2b-1B	MH465426	1767	702
51	GXGG1312a	Guigang	PMWS	Inguinal lymph node	2013	PCV2d	MH465446	1767	705
52	GXGG1312b	Guigang	PMWS	Inguinal lymph node	2013	PCV2d	MH465447	1767	705
53	GXBS1401	Baise	PMWS	Inguinal lymph node	2014	PCV2d	MH465439	1767	705
54	GXYL1401	Yulin	PMWS	Inguinal lymph node	2014	PCV2d	MH465476	1767	705
55	GXYL1403a	Yulin	PMWS	Inguinal lymph node	2014	PCV2d	MH465477	1767	705
56	GXYL1403b	Yulin	PMWS	Inguinal lymph node	2014	PCV2d	MH465478	1767	705
57	GXYL1405	Yulin	PMWS	Inguinal lymph node	2014	PCV2d	MH465479	1767	705
58	GXLB1405	Laibin	PMWS	Inguinal lymph node	2014	PCV2b-1B	MH465410	1767	702
59	GXLZ1406	Liuzhou	PMWS	Inguinal lymph node	2014	PCV2d	MH465456	1767	705
60	GXNN1406	Nanning	PMWS	Inguinal lymph node	2014	PCV2b-1B	MH465427	1767	702
61	GXYL1408	Yulin	PMWS	Inguinal lymph node	2014	PCV2e	MH465491	1767	705
62	GXNN1409a	Nanning	PMWS	Inguinal lymph node	2014	PCV2d	MH465462	1767	705
63	GXNN1409b	Nanning	PMWS	Inguinal lymph node	2014	PCV2e	MH465487	1768	702
64	GXYL1409	Yulin	PMWS	Inguinal lymph node	2014	PCV2b-1B	MH465438	1767	702
65	GXYL1410	Yulin	PMWS	Inguinal lymph node	2014	PCV2d	MH465480	1767	705
66	GXNN1410a	Nanning	PMWS	Inguinal lymph node	2014	PCV2d	MH465463	1767	705
67	GXCZ1410	Chongzuo	PMWS	Inguinal lymph node	2014	PCV2b-1B	MH465403	1767	702
68	GXNN1410b	Nanning	PMWS	Inguinal lymph node	2014	PCV2e	MH465488	1768	702
69	GXNN1410c	Nanning	PMWS	Inguinal lymph node	2014	PCV2d	MH465464	1767	705
70	GXBS1410	Baise	PMWS	Inguinal lymph node	2014	PCV2d	MH465440	1767	705
71	GXFC1501	Fangchenggang	PMWS	lymph node	2015	PCV2d	MH465443	1767	705
72	GXNN1501	Nanning	No signs	Lung, spleen, lymph node	2015	PCV2d	MH465465	1767	705
73	GXNN1503	Nanning	No signs	Lung, spleen, lymph node	2015	PCV2d	MH465466	1767	705
74	GXNN1504	Nanning	No signs	Lung, spleen, lymph node	2015	PCV2d	MH465467	1767	705
75	GXCZ1510a	Chongzuo	PMWS	lymph node	2015	PCV2d	MH465441	1767	705
76	GXCZ1510b	Chongzuo	PMWS	lymph node	2015	PCV2d	MH465442	1767	705
77	GXHC1511	Hechi	No signs	Lung, spleen, lymph node	2015	PCV2d	MH465448	1767	705
78	GXNN1511	Nanning	No signs	Lung, spleen, lymph node	2015	PCV2b-1B	MH465428	1767	702
79	GXLB1511a	Laibin	No signs	Lung, spleen, lymph node	2015	PCV2b-1B	MH465411	1767	702
80	GXLB1511b	Laibin	No signs	Lung, spleen, lymph node	2015	PCV2b-1B	MH465412	1767	702
81	GXLB1511c	Laibin	PMWS	Lung, spleen, lymph node	2015	PCV2b-1B	MH465413	1767	702
82	GXYL1512	Laibin	PMWS	Lung, spleen, lymph node	2015	PCV2d	MH465481	1767	705
83	GXQZ1601	Qinzhou	PMWS	lymph node	2016	PCV2d	MH465472	1767	705
84	GXNN1602	Nanning	PMWS	Lung, lymph node	2016	PCV2d	MH465468	1767	705
85	GXNN1603a	Nanning	PMWS	lymph node	2016	PCV2d	MH465469	1767	705
86	GXNN1603b	Nanning	PMWS	Lung	2016	PCV2b-1B	MH465429	1767	702
87	GXNN1604a	Nanning	No signs	Lung, spleen, lymph node	2016	PCV2a	MH465489	1768	702
88	GXNN1604b	Nanning	No signs	Lung, spleen, lymph node	2016	PCV2b-1B	MH465430	1767	702
89	GXLB1606	Laibin	PMWS	Lung, spleen, lymph node	2016	PCV2d	MH465451	1767	705
90	GXBS1607a	Baise	PMWS	Lung, spleen, lymph node	2016	PCV2e	MH465400	1767	702
91	GXBS1607b	Baise	PMWS	Lung, spleen, lymph node	2016	PCV2e	MH465401	1767	702
92	GXYL1607	Yulin	PMWS	Lung, spleen, lymph node	2016	PCV2d	MH465482	1767	705
93	GXNN1612a	Nanning	PMWS	spleen	2016	PCV2d	MH465470	1767	705
94	GXNN1612b	Nanning	No signs	lymph node	2016	PCV2d	MH465471	1767	705
95	GXNN1612c	Nanning	No signs	Lung, spleen, lymph node	2016	PCV2b-1B	MH465431	1767	702

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