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Table 1 Summary of sequence read alignments to the reference genome

From: Chi-miR-3031 regulates beta-casein via the PI3K/AKT-mTOR signaling pathway in goat mammary epithelial cells (GMECs)

Category

Chi-miR-3031

Negative control

Reads number

Percentage

Reads number

Percentage

Total reads

46,351,307

100%

44,748,620

100%

Total mapped reads

43,734,071

94.35%

40,333,973

90.16%

Multiple mapped reads

3,940,568

8.50%

3,802,457

8.50%

Uniquely mapped reads

39,793,503

85.85%

36,531,517

81.66%

Reads mapped in proper pairs

37,712,533

81.36%

33,479,622

74.82%

  1. Note: Total reads: total number of sequencing reads. Total mapped reads: the reads that aligned to reference sequence and its ratio. Multiple mapped reads: in total mapped reads, reads aligned to two or more places. Uniquely mapped reads: in total mapped reads, reads aligned to only one position. Reads mapped in proper pairs: paired-end sequencing sequence aligned to the chromosome reasonable direction and position
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BMC Veterinary Research

ISSN: 1746-6148

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