Table 3 Diversity, frequency, and molecular features of canine-derived Giardia duodenalis isolates at the beta-giardin locus. Castellón, Eastern Spain, 2014–2016. GenBank accession numbers are provided. Novel genotypes are shown underlined
Assemblage | Sub-assemblage | No. isolates | Dog status | Reference sequence | Stretch (pb) | Single nucleotide polymorphism(s) | GenBank accession number |
|---|---|---|---|---|---|---|---|
A | AII | 1 | Hunting | AY072723 | 97–590 | T187Y | MF285578 |
1 | Hunting | AY072723 | 102–590 | A227R, G434A | MF285579 | ||
1 | Hunting | AY072723 | 98–590 | G261A, G277A, T329A, T564C | MF285580 | ||
1 | Sheltered | AY072723 | 106–587 | T390Y | MF285581 | ||
AIII | 1 | Shepherd | AY072724 | 103–590 | A125R, C414Y, T558Y | MF285582 | |
B | – | 1 | Breeding | AY072727 | 104–590 | G159A, C165T, C309T, C324T, C393T, T471C | MF285583 |
C | – | 1 | Sheltered | AY545646 | 11–500 | G37A, C451T | MF285584 |
D | – | 1 | Sheltered | AY545647 | 105–590 | No | MF285585 |
– | 1 | Sheltered | AY545647 | 105–590 | G129A, A201G, C207A, A455R | MF285586 | |
– | 1 | Sheltered | AY545647 | 105–590 | A201G, C207Y | MF285587 |