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Table 2 Summary of the complete PCV genomes sequenced used in this study

From: Genetic variation analysis of PCV1 strains isolated from Guangxi Province of China in 2015

Strain name Accesion Number Country Collection Date Genotype Length(nt) Source Linical condition/tissue origin of isolation
BJ-1 FJ475129 Beijing, China 07/5/2009 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
PCV1 AY193712 Zhijiang, China 17/2/2003 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
PCV1-Hun KJ408799 Hungary 16/4/2014 PCV1 1759bp GenBank lymph nodes, spleen, lung and other tissue materials
PCV1-Eng-1970 KJ408798 United Kingdom 16/4/2014 PCV1 1759bp GenBank lymph nodes, spleen, lung and other tissue materials
PCV1-XFD-Beijing KC447455 Beijing, China 16/4/2013 PCV1 1759bp GenBank lymph nodes, spleen, lung and other tissue materials
PCV1/G JN398656 Harbin, China 31/8/2011 PCV1 1759bp GenBank Contaminated PK-15 cell
HZ2006 EF533941 Hangzhou, China 01/5/2007 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
NMB GU799575 USA 28/2/2011 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
Jiangsu GU722334 Jiangsu, China 03/3/2010 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
Tian Jin GU371908 Tianjin, China 06/2/2010 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
ZY KF732857 Guiyang, China 08/1/2014 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
DY KC924758 Guiyang, China 13/8/2013 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
GY KC894933 Guiyang, China 06/8/2013 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
Guiyang KC878437 Guiyang, China 30/7/2013 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
ZZ-3 KC733436 Zhengzhou, China 18/6/2013 PCV1 1759bp GenBank Lymph node
NJ03 JX566507 Nanjing, China 06/5/2013 PCV1 1759bp GenBank Congenital tremors/lymph nodes, spleen, lung and other tissue materials
CT-PCV-P7 AY099501 USA 19/5/2009 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
CCL33-UGent JN133303 Belgium 12/11/2011 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
3384 JN133302 United Kingdom 12/11/2011 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
HRB-09 GQ449671 Beijing, China 24/10/2011 PCV1 1758bp GenBank PK-15 cell culture
PCV3_Rotarix_con1 HM143844 USA 20/6/2010 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
SC-10 DQ659154 Guangdong, China 19/6/2006 PCV1 1759bp GenBank Pig serum
SC-9 DQ659153 Guangdong, China 19/6/2006 PCV1 1759bp GenBank Pig serum
SC-8 DQ494788 Guangdong, China 06/5/2006 PCV1 1759bp GenBank Pig serum
SC-7 DQ494787 Guangdong, China 06/5/2006 PCV1 1759bp GenBank Pig serum
SC-5 DQ472016 Guangdong, China 24/4/2006 PCV1 1759bp GenBank Pig serum
SC-6 DQ472015 Guangdong, China 24/4/2006 PCV1 1759bp GenBank Pig serum
SC-4 DQ472014 Guangdong, China 24/4/2006 PCV1 1759bp GenBank Pig serum
SC-3 DQ472013 Guangdong, China 24/4/2006 PCV1 1759bp GenBank Pig serum
SC-2 DQ472012 Guangdong, China 24/4/2006 PCV1 1759bp GenBank Pig serum
NT70719 FJ159693 Jiangsu, China 23/9/2008 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
TZ70717 FJ159692 Jiangsu, China 23/9/2008 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
SD-73-3 KJ746930 Shandong, China 15/7/2014 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
TJ1307 KJ808815 Beijing, China 18/8/2014 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
SD-73-1 KJ746929 Shandong, China 15/7/2014 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
PK DQ650650 Jiangsu, China 08/7/2006 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
Aust4 AY754015 Australia 21/3/2014 PCV1 1759bp GenBank PK-15 cell culture
Aust3 AY754014 Australia 21/3/2014 PCV1 1759bp GenBank PK-15 cell culture
SC-1 DQ358813 Guangdong, China 01/3/2006 PCV1 1759bp GenBank Pig serum
WB-H-8 DQ648032 Hungary 02/7/2006 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
YZ70719 FJ159691 Jiangsu, China 23/9/2008 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
YZ70722 FJ159689 Jiangsu, China 23/9/2008 PCV1 1759bp GenBank Lymph nodes, spleen, lung and other tissue materials
PCV2a AF027217 Canada 19/3/2009 PCV2a 1768bp GenBank Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials
PCV2b AF112862 Canada 12/10/2005 PCV2b 1768bp GenBank Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials
PCV2c AF109398 Canada 23/7/2001 PCV2c 1768bp GenBank Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials
PCV2d-1(P2425NT) JX099786 Viet Nam 01/5/2014 PCV2d-1 1767bp GenBank Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials
PCV2d-2(CS5) KX161667 Hunan, China 05/6/2016 PCV2d-2 1767bp GenBank Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials
GXdx115 KX827778 Guangxi, China 00/7/2015 PCV1 1759bp This study Lungs, spleen, and lymph nodes
GXdx105 KX827779 Guangxi, China 00/7/2015 PCV1 1759bp This study Lungs, spleen, and lymph nodes
GXdx64 KX827780 Guangxi, China 00/7/2015 PCV1 1759bp This study Lungs, spleen, and lymph nodes
GXdx51 KX827781 Guangxi, China 00/7/2015 PCV1 1759bp This study Lungs, spleen, and lymph nodes
GXbb158 KX827782 Guangxi, China 00/7/2015 PCV1 1759bp This study Lungs, spleen, and lymph nodes
GXyl225 KX827783 Guangxi, China 00/7/2015 PCV1 1759bp This study Lungs, spleen, and lymph nodes
GXyl224 KX827784 Guangxi, China 00/7/2015 PCV1 1759bp This study Lungs, spleen, and lymph nodes
GXlsh19 KX827785 Guangxi, China 00/7/2015 PCV1 1759bp This study Lungs, spleen, and lymph nodes
GXlsh12 KX827786 Guangxi, China 00/7/2015 PCV1 1759bp This study Lungs, spleen, and lymph nodes
GXlsh11 KX827787 Guangxi, China 00/7/2015 PCV1 1759bp This study Lungs, spleen, and lymph nodes
GXlsh10 KX827788 Guangxi, China 00/7/2015 PCV1 1759bp This study Lungs, spleen, and lymph nodes
GXlsh7 KX827789 Guangxi, China 00/7/2015 PCV1 1759bp This study Lungs, spleen, and lymph nodes
GXlsh2 KX827790 Guangxi, China 00/7/2015 PCV1 1759bp This study Lungs, spleen, and lymph nodes
GXdx84 KY437725 Guangxi, China 00/7/2015 PCV1/2d 1757bp This study Lungs, spleen, and lymph nodes