Table 1 Background information data for Newcastle disease viruses isolated in Egypt, Ukraine, Pakistan, Bulgaria and South Korea analyzed in this study
Isolate name | Collection year | Country | Location | Host | Health status | Husbandry | Flock size | Age | Sequence coverage | Cleavage site motif (positions 113–117) | Genotype | GenBank acc.# | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Scientific name | Common name | ||||||||||||
Giza/11 | 2015 | Egypt | Giza | Columba livia | pigeon | apparently healthy | live bird market | NA | NA | complete genome | RQKR↓F | VI g | KY042129 |
Helwan/44 | 2015 | Egypt | Helwan | Columba livia | pigeon | apparently healthy | live bird market | NA | NA | complete genome | RQKR↓F | VI g | KY042130 |
Qena/56 | 2015 | Egypt | Qena | Columba livia | pigeon | apparently healthy | pet | 200 | 2 years | complete genome | RQKR↓F | VI g | KY042131 |
El Fayom/73 | 2015 | Egypt | El Fayom | Columba livia | pigeon | apparently healthy | pet | NA | NA | complete genome | RQKR↓F | VI g | KY042132 |
El Fayom /79 | 2015 | Egypt | El Fayom | Columba livia | pigeon | apparently healthy | pet | NA | NA | complete genome | RQKR↓F | VI g | KY042133 |
El Fayom/84 | 2015 | Egypt | El Fayom | Columba livia | pigeon | apparently healthy | pet | NA | NA | complete genome | RQKR↓F | VI g | KY042134 |
Ukraine/Kharkiv/2301 | 2013 | Ukraine | Kharkiv | Columba livia | pigeon | dead/sick | pet | NA | 2 years | complete genome | RQKR↓F | VI g | KY042127 |
Ukraine/Doneck/3 | 2007 | Ukraine | Doneck | Columba livia | pigeon | dead/sick | pet | NA | 2 years | complete genome | RQKR↓F | VI g | KY042128 |
Jhang/115a | 2015 | Pakistan | Jhang | Columba livia | pigeon | dead/sick | pet | 110 | 2 year | full fusion | RKKR↓F | VI g | KY042137 |
Lahore/125a | 2015 | Pakistan | Lahore | Columba livia | pigeon | dead/sick | pet | 200 | 1.5 years | full fusion | RKKR↓F | VI g | KY042136 |
Lahore/126a | 2015 | Pakistan | Lahore | Columba livia | pigeon | dead/sick | pet | 200 | 1.5 years | full fusion | RKKR↓F | VI g | KY042138 |
Lahore/146a | 2016 | Pakistan | Lahore | Columba livia | pigeon | dead/sick | pet | 55 | 1 year | full fusion | RKKR↓F | VI g | KY042139 |
Lahore/AW-1a | 2014 | Pakistan | Lahore | Columba livia | pigeon | dead | wildlife | 39 | 2 years | full fusion | RQRR↓F | VI m | KU862297 |
Lahore/AW-2a | 2015 | Pakistan | Lahore | Columba livia | pigeon | dead/sick | pet | 25 | 2 years | full fusion | RQRR↓F | VI m | KU862298 |
Lahore/AW-3a | 2015 | Pakistan | Lahore | Columba livia | pigeon | dead/sick | pet | 200 | 3 months | full fusion | RQRR↓F | VI m | KU862299 |
Jallo-Lahore/221Aa | 2016 | Pakistan | Lahore | Columba livia | pigeon | sick | zoo | 20 | 2 years | full fusion | RQKR↓F | VI m | KY042140 |
Jallo-Lahore/221Ba | 2016 | Pakistan | Lahore | Columba livia | pigeon | sick | zoo | 20 | 2 years | full fusion | RQKR↓F | VI m | KY042141 |
Lahore/21A | 2015 | Pakistan | Lahore | Columba livia | pigeon | NA | NA | NA | NA | complete genome | RQKR↓F | VI m | KX236100 |
Lahore/22A | 2015 | Pakistan | Lahore | Columba livia | pigeon | dead/sick | pet | 30 | 8 months | complete genome | RQKR↓F | VI m | KY042135 |
Lahore/25A | 2015 | Pakistan | Lahore | Columba livia | pigeon | NA | pet | 20 | 1 year | complete genome | RQKR↓F | VI m | KX236101 |
Mokresh | 1982 | Bulgaria | Mokresh | Gallus gallus | chicken | NA | NA | NA | NA | complete genome | RQKR↓F | VI | KY042126 |
Dolnolinevo | 1992 | Bulgaria | Dolno Linevo | Gallus gallus | chicken | NA | NA | NA | NA | complete genome | RQKR↓F | VI c | KY042125 |
93-58GG | 1993 | South Korea | NA | Gallus gallus | chicken | NA | broiler farm | NA | 14 days | full fusion | RRKR↓F | VI c | KY042142 |
88 M | 1988 | South Korea | NA | Coturnix coturnix | quail | NA | NA | NA | NA | full fusion | RRKR↓F | VI c | KY042143 |