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Table 1 Background information data for Newcastle disease viruses isolated in Egypt, Ukraine, Pakistan, Bulgaria and South Korea analyzed in this study

From: Phylogenetic assessment reveals continuous evolution and circulation of pigeon-derived virulent avian avulaviruses 1 in Eastern Europe, Asia, and Africa

Isolate name Collection year Country Location Host Health status Husbandry Flock
size
Age Sequence coverage Cleavage site
motif (positions 113–117)
Genotype GenBank acc.#
Scientific name Common name
Giza/11 2015 Egypt Giza Columba livia pigeon apparently healthy live bird market NA NA complete genome RQKR↓F VI g KY042129
Helwan/44 2015 Egypt Helwan Columba livia pigeon apparently healthy live bird market NA NA complete genome RQKR↓F VI g KY042130
Qena/56 2015 Egypt Qena Columba livia pigeon apparently healthy pet 200 2 years complete genome RQKR↓F VI g KY042131
El Fayom/73 2015 Egypt El Fayom Columba livia pigeon apparently healthy pet NA NA complete genome RQKR↓F VI g KY042132
El Fayom /79 2015 Egypt El Fayom Columba livia pigeon apparently healthy pet NA NA complete genome RQKR↓F VI g KY042133
El Fayom/84 2015 Egypt El Fayom Columba livia pigeon apparently healthy pet NA NA complete genome RQKR↓F VI g KY042134
Ukraine/Kharkiv/2301 2013 Ukraine Kharkiv Columba livia pigeon dead/sick pet NA 2 years complete genome RQKR↓F VI g KY042127
Ukraine/Doneck/3 2007 Ukraine Doneck Columba livia pigeon dead/sick pet NA 2 years complete genome RQKR↓F VI g KY042128
Jhang/115a 2015 Pakistan Jhang Columba livia pigeon dead/sick pet 110 2 year full fusion RKKR↓F VI g KY042137
Lahore/125a 2015 Pakistan Lahore Columba livia pigeon dead/sick pet 200 1.5 years full fusion RKKR↓F VI g KY042136
Lahore/126a 2015 Pakistan Lahore Columba livia pigeon dead/sick pet 200 1.5 years full fusion RKKR↓F VI g KY042138
Lahore/146a 2016 Pakistan Lahore Columba livia pigeon dead/sick pet 55 1 year full fusion RKKR↓F VI g KY042139
Lahore/AW-1a 2014 Pakistan Lahore Columba livia pigeon dead wildlife 39 2 years full fusion RQRR↓F VI m KU862297
Lahore/AW-2a 2015 Pakistan Lahore Columba livia pigeon dead/sick pet 25 2 years full fusion RQRR↓F VI m KU862298
Lahore/AW-3a 2015 Pakistan Lahore Columba livia pigeon dead/sick pet 200 3 months full fusion RQRR↓F VI m KU862299
Jallo-Lahore/221Aa 2016 Pakistan Lahore Columba livia pigeon sick zoo 20 2 years full fusion RQKR↓F VI m KY042140
Jallo-Lahore/221Ba 2016 Pakistan Lahore Columba livia pigeon sick zoo 20 2 years full fusion RQKR↓F VI m KY042141
Lahore/21A 2015 Pakistan Lahore Columba livia pigeon NA NA NA NA complete genome RQKR↓F VI m KX236100
Lahore/22A 2015 Pakistan Lahore Columba livia pigeon dead/sick pet 30 8 months complete genome RQKR↓F VI m KY042135
Lahore/25A 2015 Pakistan Lahore Columba livia pigeon NA pet 20 1 year complete genome RQKR↓F VI m KX236101
Mokresh 1982 Bulgaria Mokresh Gallus gallus chicken NA NA NA NA complete genome RQKR↓F VI KY042126
Dolnolinevo 1992 Bulgaria Dolno Linevo Gallus gallus chicken NA NA NA NA complete genome RQKR↓F VI c KY042125
93-58GG 1993 South Korea NA Gallus gallus chicken NA broiler farm NA 14 days full fusion RRKR↓F VI c KY042142
88 M 1988 South Korea NA Coturnix coturnix quail NA NA NA NA full fusion RRKR↓F VI c KY042143
  1. a these viruses were studied in Pakistan at the Quality Operations Laboratory (QOL) of the University of Veterinary & Animal Sciences (UVAS)
  2. NA = not available