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Table 1 List of variables included in GLMSELECT procedure to produce final multivariate model

From: Associations between Mycobacterium avium subsp. paratuberculosis antibodies in bulk tank milk, season of sampling and protocols for managing infected cows

Variable

Type

Description

Production

Binary

Organic or Conventional

State

Nominal

NY, OR, or WI

Herd size

Ordinal

< 100, 100 to 200, or > 200

Parity

Continuous

The average lactation of all lactating cows at the time of the survey

Average yield

Continuous

Average annual milk production per cow

Calf housing

Nominal

Always housed in individual pens or areas; sometimes housed in groups or with contact to cows; always housed in groups or with contact to cows

Description of calving area

Nominal

Dedicated calving area; area shared with lactating cows; or area sometimes shared with sick cows

Heifer and cow contact on pasture

Nominal

Heifers grazing a pasture with or after the cows; before the cows; or heifers and cows do not graze the same pasture

Jersey

Binary

Mostly Jersey or not mostly Jersey herd

Johne’s procedures

Nominal

Procedures for MAP-positive cows: cull after calving or dry off; cull immediately; keep; never observed clinical Johne’s disease

Johne’s program

Binary

Participation in Johne’s program

Open farm

Binary

Some or no entering animals

Seasonality sine

Continuous

Sin 2 π Day 365 , where day is a continuous variable from 1 to 365

Seasonality cosine

Continuous

Cos 2 π Day 365 , where day is a continuous variable from 1 to 365

Source of drinking water

Nominal

Primary source of drinking water for 60 days prior to survey: well; municipal water; or surface water

Spreading manure

Binary

Manure spreading on pasture or fields that will be consumed by animals

Written plan for Johne’s disease

Binary

Written herd plan for managing Johne’s disease