Table 2 List of virus strains used for optimization and evaluation of analytical specificity of the TaqMan probe based real time PCR assays
Virus strain | Genotype or subtype | Country of origin | GenBank accession number |
|---|---|---|---|
KV1514 | A1 | Iceland | M10608 |
20 BAL | A3 | Switzerland | / |
27 BAL | A3 | Switzerland | / |
120 M | A3 | Switzerland | / |
6 BAL | A4 | Switzerland | / |
94 BC | A4 | Switzerland | / |
96 BAL | A4 | Switzerland | / |
CAEV Co | B1 | USA | M33677 |
AghOv478 | B2 | France | / |
1-24g | B1*1 | Slovenia | HQ910472 |
1-43g | B1*1 | Slovenia | HQ910475 |
1-65g | B1*1 | Slovenia | HQ910476 |
1-66g | B1*1 | Slovenia | HQ910478 |
1-77g | B1*1 | Slovenia | HQ910477 |
2-8g | A14*1 | Slovenia | HQ910466 |
2-15g | A14*1 | Slovenia | HQ910467 |
2-26g | A14*1 | Slovenia | HQ910468 |
2-33g | A14*1 | Slovenia | HQ910469 |
2-55g | A14*1 | Slovenia | HQ910470 |
31-4s | A15*1 | Slovenia | JQ611027*2 |
31-9s | A15*1 | Slovenia | JQ611028*2 |
31-12s | A15*1 | Slovenia | JQ611029*2 |
31-18s | A15*1 | Slovenia | JQ611030*2 |
35-1s | A5*1 | Slovenia | JQ610907 |
35-44s | A5*1 | Slovenia | JQ610917 |
35-49s | A5*1 | Slovenia | JQ610919 |
36-10s | A5*1 | Slovenia | JQ610931 |
36-14s | A5*1 | Slovenia | JQ610932 |
37-20g | B1*1 | Slovenia | JQ610942 |
37-25g | B1*1 | Slovenia | JQ610943 |
37-31g | B1*1 | Slovenia | JQ610944 |
37-63g | B1*1 | Slovenia | JQ610949 |
37-65g | B1*1 | Slovenia | JQ610950 |
37-88g | A*1 | Slovenia | JQ610988*2 |