Locus | Primer | Oligonucleotide sequence (5'-3') | Amplicon size (bp) | SCCmectypee | Reference |
---|---|---|---|---|---|
SCCmec | Â | Â | Â | Â | Â |
A | CIF2 F2 a | TTCGAGTTGCTGATGAAGAAGG | 495 | I | [17] |
 | CIF2 R2 a | ATTTACCACAAGGACTACCAGC |  |  |  |
B | KDP F1 b | AATCATCTGCCATTGGTGATGC | 284 | II | [18] |
 | KDP R1 b | CGAATGAAGTGAAAGAAAGTGG |  |  |  |
C | MECI P2 b | ATCAAGACTTGCATTCAGGC | 209 | II, III | Â |
 | MECI P3 b | GCGGTTTCAATTCACTTGTC |  |  |  |
D | DCS F2a | CATCCTATGATAGCTTGGTC | 342 | I, II, IV | [17] |
 | DCS R1a | CTAAATCATAGCCATGACCG |  |  |  |
E | RIF4 F3c | GTGATTGTTCGAGATATGTGG | 243 | III | [18] |
 | RIF4 R9c | CGCTTTATCTGTATCTATCGC |  |  |  |
F | RIF5 F10c | TTCTTAAGTACACGCTGAATCG | 414 | III | Â |
 | RIF5 R13c | GTCACAGTAATTCCATCAATGC |  |  |  |
G | IS431 P4b | CAGGTCTCTTCAGATCTACG | 381 | Â | Â |
 | pUB110 R1b | GAGCCATAAACACCAATAGCC |  |  |  |
H | IS431 P4c | CAGGTCTCTTCAGATCTACG | 303 | Â | Â |
 | pT181 R1c | GAAGAATGGGGAAAGCTTCAC |  |  |  |
mecA | MECA P4d | TCCAGATTACAACTTCACCAGG | 162 | Internal control | [16] |
 | MECA P7d | CCACTTCATATCTTGTAACG |  |  |  |
Staphylococcal enterotoxin (SEs) | |||||
sea | ESA 1 | ACGATCAATTTTTACAGC | 544 | Â | [68] |
 | ESA 2 | TGCATGTTTTCAGAGTTAATC |  |  |  |
seb | ESB 1 | GAATGATATTAATTCGCATC | 416 | Â | [69] |
 | ESB 2 | TCTTTGTCGTAAGATAAACTTC |  |  |  |
sec | ESC 1 | GACATAAAAGCTAGGAATTT | 257 | Â | [70] |
 | ESC 2 | AAATCGGATTAACATTATCCA |  |  |  |
sed | ESD 1 | TTACTAGTTTGGTAATATCTCCTT | 334 | Â | [71] |
 | ESD 2 | CCACCATAACAATTAATGC |  |  |  |
see | ESE 1 | ATAGATAAAGTTAAAACAAGCAA | 170 | Â | [72] |
 | ESE 2 | TAACTTACCGTGGACCC |  |  |  |
seg | ESG 1 | ACGTCTCCACCTGTTGAAGG | 400 | Â | [73] |
 | ESG 2 | TGAGCCAGTGTCTTGCTTTG |  |  |  |
seh | ESH 1 | TCACATCATATGCGAAAGCAG | 357 | Â | [74] |
 | ESH 2 | TAGCACCAATCACCCTTTCC |  |  |  |
sei | ESI 1 | TGGAACAGGACAAGCTGAAA | 467 | Â | [73] |
 | ESI 2 | TAAAGTGGCCCCTCCATACA |  |  |  |
sej | ESJ 1 | CAGCGATAGCAAAAATGAAACA | 426 | Â | [75] |
 | ESJ 2 | TCTAGCGGAACAACAGTTCTGA |  |  |  |
Sec f | setC-F setC-R | AGATTTAGCAAAGAAGTACAAAGATG AAGGTGGACTTCTATCTTCACACTT | 490 | Â | [76] |