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Table 3 MIRU-VNTR/SSR pattern of the 84 Type C isolates coming from different herds.

From: Effectiveness of combination of Mini-and Microsatellite loci to sub-type Mycobacterium avium subsp. paratuberculosis Italian type C isolates

 

MIRU-VNTR/SSR types

No. of isolates

%

MIRU-VNTR

typesa

SSR

typesb

Herd No.c

 

MVS 1

1

1.2

MV 1

S 4

37

 

MVS 2

1

1.2

MV 2

S 3

18

 

MVS 3

2

2.4

MV 3

S 2

64, 69

 

MVS 4

2

2.4

MV 3

S 3

15, 61

 

MVS 5

3

3.6

MV 4

S 1

2, 23, 66

 

MVS 6

4

4.8

MV 4

S 2

54, 55, 82, 84

 

MVS 7

3

3.6

MV 4

S 3

8, 49, 59

 

MVS 8

3

3.6

MV 4

S 4

5, 14, 21

 

MVS 9

1

1.2

MV 4

S 6

81

 

MVS 10

2

2.4

MV 4

S 7

10, 71

 

MVS 11

1

1.2

MV 4

S 8

39

 

MVS 12

1

1.2

MV 4

S 11

1

 

MVS 13

3

3.6

MV 5

S 2

17, 25, 72

 

MVS 14

2

2.4

MV 5

S 4

29, 63

 

MVS 15

1

1.2

MV 6

S 15

47

 

MVS 16

1

1.2

MV 7

S 4

28

 

MVS 17

1

1.2

MV 8

S 12

65

 

MVS 18

1

1.2

MV 8

S 14

36

 

MVS 19

3

3.6

MV 9

S 2

41, 45, 51

 

MVS 20

1

1.2

MV 9

S 3

9

 

MVS 21

1

1.2

MV 9

S 4

12

 

MVS 22

1

1.2

MV 9

S 5

62

 

MVS 23

1

1.2

MV 9

S 15

83

 

MVS 24

3

3.6

MV 10

S 1

31, 42, 67

 

MVS 25

10

11.9

MV 10

S 2

24, 27, 34, 40, 48, 58, 60, 73, 74, 76

 

MVS 26

11

13.1

MV 10

S 3

6, 13, 16, 30, 35, 43, 44, 57, 68, 77, 79

 

MVS 27

8

9.5

MV 10

S 4

4, 7, 22, 32, 53, 56, 70, 80

 

MVS 28

2

2.4

MV 10

S 9

20, 26

 

MVS 29

1

1.2

MV 10

S 10

50

 

MVS 30

4

4.8

MV 10

S 12

11, 46, 75, 78

 

MVS 31

3

3.6

MV 10

S 13

19, 38, 52

 

MVS 32

1

1.2

MV 10

14

33

 

MVS 33

1

1.2

MV 11

S 2

3

SID

0.933-0.972

  

0.597-0.775

0.799-0.881

 
  1. a according to Table 1
  2. b according to Table 2
  3. c in bold and underlined are indicated herds in the centre and south of the country, respectively, while the rest of the herds are placed in the north of Italy.