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Table 3 Significantly up-regulated genes in mammary tissue challenged with S. aureus.

From: Identification of immune genes and proteins involved in the response of bovine mammary tissue to Staphylococcus aureus infection

Function Gene symbol Genbank accession Genbank description
Chemokine, cytokine and intercellular signalling    
  CCL11 NM_002986 Homo sapiens chemokine (C-C motif) ligand 11 (CCL11), mRNA
  CCL2 NM_174006 Bos taurus chemokine (C-C motif) ligand 2 (CCL2), mRNA.
  CCL20 NM_004591 Homo sapiens chemokine (C-C motif) ligand 20 (CCL20), mRNA
  CCL3L1 NM_021006 Homo sapiens chemokine (C-C motif) ligand 3-like 1 (CCL3L1), mRNA
  CCL4L1 AY575854 Homo sapiens similar to cytokine (LOC388372), mRNA
  CSF3 NM_172219 Homo sapiens colony stimulating factor 3 (granulocyte) (CSF3), transcript variant 2, mRNA
  CXCL1 NM_001511 Homo sapiens chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity,
  CXCL2 NM_002089 Homo sapiens chemokine (C-X-C motif) ligand 2 (CXCL2), mRNA
  CXCL10 AB070717 Homo sapiens chemokine (C-X-C motif) ligand 10 (CXCL10), mRNA
  IL1B NM_174093 Bos taurus interleukin 1, beta (IL1B), mRNA.
  IL6 NM_001009392 Ovis aries interleukin 6 (IL6), mRNA
  IFNG NM_174086 interferon-gamma; Bos taurus interferon, gamma or immune type [interferon gamma type 2]
  IL8 NM_173925 Bos taurus interleukin 8 [neutrophil activating peptide 1] (IL8), mRNA.
  LEP NM_173928 Bos taurus leptin [obesity] (LEP), mRNA
  PLAUR NM_174423.2 Homo sapiens plasminogen activator, urokinase receptor (PLAUR), mRNA
  PTX3 NM_002852 Homo sapiens pentaxin-related gene, rapidly induced by IL-1 beta (PTX3), mRNA
  S100A12 NM_174651 Bos taurus S100 calcium binding protein A12 (calgranulin C) (S100A12), mRNA
  S100A2 NM_005978 Homo sapiens S100 calcium binding protein A2 (S100A2), mRNA
  THBS1 NM_174196 Homo sapiens thrombospondin 1 (THBS1), mRNA
Cell surface receptors    
  CCR1 NM_001295 Homo sapiens chemokine (C-C motif) receptor 1 (CCR1), mRNA
  CD14 NM_000591 Homo sapiens CD14 antigen (CD14), mRNA
  CD40 NM_152854 Homo sapiens tumor necrosis factor receptor superfamily, member 5 (TNFRSF5), transcript
  CSF3R NM_172313 Homo sapiens colony stimulating factor 3 receptor (granulocyte) (CSF3R), transcript variant
  IL11RA NM_147162 Homo sapiens interleukin 11 receptor, alpha (IL11RA), transcript variant 2, mRNA
  SLC2A4 NM_001042 Homo sapiens solute carrier family 2 (facilitated glucose transporter), member 4 (SLC2A4)
  TLR2 NM_003264 Homo sapiens toll-like receptor 2 (TLR2), mRNA
  TLR4 NM_138557 Homo sapiens toll-like receptor 4 (TLR4), transcript variant 4, mRNA
  TNFRSF9 NM_001561 Homo sapiens tumor necrosis factor receptor superfamily, member 9 (TNFRSF9), mRNA
Intracellular signaling    
  CDKN1A NM_078467 Homo sapiens cyclin-dependent kinase inhibitor 1A (p21, Cip1) (CDKN1A), transcript variant 2, mRNA
  FGD6 AC009159 Homo sapiens FYVE, RhoGEF and PH domain containing 6 (FGD6), mRNA
  MTMR10 AJ567991 Homo sapiens hypothetical protein FLJ20313 (FLJ20313), mRNA
  HCK NM_002110 Homo sapiens hemopoietic cell kinase (HCK), mRNA
  MARCKS NM_002356 Homo sapiens myristoylated alanine-rich protein kinase C substrate (MARCKS), mRNA
  MARCKSL1 NM_023009 Homo sapiens MARCKS-like protein (MLP), mRNA
  ZFYVE9 NM_007324 Homo sapiens MAD, mothers against decapentaplegic homolog (Drosophila) interacting
Apoptosis    
  BAT3 NM_174196 Homo sapiens HLA-B associated transcript 3 (BAT3), transcript variant 3, mRNA
  BCL2A1 NP_004040 Homo sapiens BCL2-related protein A1 (BCL2A1), mRNA
  BIRC3 NM_182962 Homo sapiens baculoviral IAP repeat-containing 3 (BIRC3), transcript variant 2, mRNA
  IER3 NM_003897 Homo sapiens immediate early response 3 (IER3), transcript variant short, mRNA
Transcription factor or regulator    
  ATF3 NM_001674 Homo sapiens activating transcription factor 3 (ATF3), mRNA
  BTG2 NM_006763 Homo sapiens BTG family, member 2 (BTG2), mRNA
  EGR1 NM_001964 Homo sapiens early growth response 1 (EGR1), mRNA
  FOS NM_005252 Homo sapiens v-fos FBJ murine osteosarcoma viral oncogene homolog (FOS), mRNA
  JUNB NM_002229 Homo sapiens jun B proto-oncogene (JUNB), mRNA
  NFKB2 NM_002502 Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells
  NFKBIA NM_020529 Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor
  NR2F6 AF338825 Homo sapiens nuclear receptor subfamily 2, group F, member 6 (NR2F6), mRNA
Assorted    
  ACSL6 NM_015256 Homo sapiens acyl-CoA synthetase long-chain family member 6 (ACSL6), mRNA
  FUT8 NM_177501 Homo sapiens fucosyltransferase 8 (alpha (1,6) fucosyltransferase) (FUT8), transcript
  HSPA1A NM_005345 Homo sapiens heat shock 70 kDa protein 1A (HSPA1A), mRNA
  MGC21881 XP_219130 Homo sapiens hypothetical protein LOC286286 (LOC286286), mRNA
  NOS2A NM_000625 Homo sapiens nitric oxide synthase 2A (inducible, hepatocytes) (NOS2A), transcript variant
  SOD2 L22092 Homo sapiens superoxide dismutase 2, mitochondrial (SOD2), mRNA
  TIMP1 NM_003254 Homo sapiens tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase)
  TUBA1 NM_006000 Homo sapiens tubulin, alpha 1 (testis specific) (TUBA1), mRNA
  WARS NM_174218 Homo sapiens tryptophanyl-tRNA synthetase (WARS), mRNA