Table 2 Reference genome alignment read statistics

An-1

84,696,486

82,034,935(96.86%)

80,090,317(94.56%)

1,944,618(2.30%)

40,493,216(47.81%)

40,734,236(48.09%)

An-2

74,116,322

71,933,700(97.06%)

70,038,566(94.50%)

1,895,134(2.56%)

35,414,125(47.78%)

35,686,086(48.15%)

An-3

78,545,638

75,901,736(96.63%)

74,231,526(94.51%)

1,670,210(2.13%)

37,522,695(47.77%)

37,727,620(48.03%)

Cn-1

88,865,650

85,667,796(96.40%)

83,995,291(94.52%)

1,672,505(1.88%)

42,335,644(47.64%)

42,590,460(47.93%)

Cn-2

74,453,316

72,186,065(96.95%)

70,795,057(95.09%)

1,391,008(1.87%)

35,743,062(48.01%)

35,899,322(48.22%)

Cn-3

73,428,812

71,309,587(97.11%)

69,906,385(95.20%)

1,403,202(1.91%)

35,282,068(48.05%)

35,445,462(48.27%)

Tn-1

91,640,952

88,875,344(96.98%)

87,231,194(95.19%)

1,644,150(1.79%)

43,958,663(47.97%)

44,189,339(48.22%)

Tn-2

84,513,820

82,006,488(97.03%)

80,269,594(94.98%)

1,736,894(2.06%)

40,500,070(47.92%)

40,726,197(48.19%)

Tn-3

82,937,808

80,546,632(97.12%)

79,025,282(95.28%)

1,521,350(1.83%)

39,910,813(48.12%)

40,074,042(48.32%)