Table 1 Virus sequences included in this study and their respective hosts
Virus Group | Name of Virus | Accession ID | Host Species |
|---|---|---|---|
Alphacoronavirus (α) | Feline Infectious Peritonitis (FIP) | NC_002306.3 | Cat |
Feline Coronavirus (strain UU11) | FJ938052.1 | Cat | |
Canine Coronavirus | KC175340.1 | Dog | |
Porcine Epidemic Diarrhea (PED) virus | NC_028806.1 | Pig | |
Transmissible Gastroenteritis (TGE) virus | NC_038861.1 | Pig | |
Ferret Coronavirus | NC_030292.1 | Ferret | |
Mink Coronavirus | NC_023760.1 | Mink | |
Alpaca Respiratory Coronavirus | JQ410000.1 | Alpaca | |
Betacoronavirus (β) | Canine Respiratory Coronavirus | KX432213.1 | Dog |
Bovine Coronavirus | NC_003045.1 | Cattle | |
White-tailed Deer Coronavirus | FJ425187.1 | Whitetail Deer | |
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) | NC_045512.2 | Human | |
Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) | YP_009825051.1 | Human | |
Middle East Respiratory Syndrome Coronavirus MERS-CoV | YP_009047204.1 | Human | |
MERS-like Coronavirus (PREDICT/PDF-2180) | NC_034440.1 | Pipistrelle Bat | |
Mouse Coronavirus | FJ647220.1 | Mouse | |
Rat Coronavirus | KF294371.1 | Rat | |
Rabbit Coronavirus | JN874562.1 | Rabbit | |
SARS-CoV-2 | QLC48407.1 | Tiger | |
Murine Coronavirus | ACN89705.1 | Mouse | |
Sable Antelope Coronavirus | ABP38306.1 | Sable Antelope | |
Giraffe Coronavirus beta | ABP38334.1 | Giraffe | |
Human Coronavirus OC43 beta | AMK59677.1 | Human | |
Human Coronavirus OC43 | AWW13551.1 | Chimpanzee | |
Camel Coronavirus HKU23 beta | ALA50080.1 | Camel | |
Buffalo Coronavirus | ANJ04717.1 | Buffalo | |
Equine Coronavirus | BAS18866.1 | Horse | |
Gammacoronavirus (γ) | Avian Infectious Bronchitis | NC_001451.1 | Chicken |
Turkey Coronavirus | NC_010800.1. | Turkey | |
Duck Coronavirus | NC_048214.1 | Duck | |
Bottlenose Dolphin Coronavirus | MN690608.1 | Bottlenose Dolphin | |
Beluga Whale Coronavirus | NC_010646.1 | Beluga Whale |