Table 2 Comparison of the CVR, p54 and CD2v (C-terminal) profiles of the 2018 ASF outbreak isolates from Burkina
From: Molecular characterization of African swine fever viruses from Burkina Faso, 2018
Isolate name | CVR | Number of repeats (CVR) | p54 (PAAA repeats) | CD2v (number of deleted PCPPPK) | Location | Outbreak date |
|---|---|---|---|---|---|---|
BKF_2018_01 | ABNAAAAAAACAAAAAACBNAFA | 23 | 3 | 2 | Kossodo | 28-Sep-18 |
BKF_2018_02 | ABNAAAAAAACAAAAAACBNAFA | 23 | 3 | 2 | Kossodo | 28-Sep-18 |
BKF_2018_03 | ABNAAAAAAACAAAAAACBNAFA | 23 | 3 | 2 | Kossodo | 28-Sep-18 |
BKF_2018_05 | ABNAAAAACBNAAAAACBNAAAAAAACBNAFA | 32 | 3 | 4 | Kossodo | 28-Sep-18 |
BKF_2018_06 | ABNAAACBNAFA | 12 | 2 | 0 | Kossodo | 28-Sep-18 |
BKF_2018_07 | ABNAAACBNAFA | 12 | 2 | 0 | Kossodo | 28-Sep-18 |
BKF_2018_08 | ABNAAACBNAFA | 12 | 2 | 0 | Kossodo | 28-Sep-18 |
BKF_2018_09 | AAAABNABBNABBAABBNABNABA | 24 | 2 | ND | Nioko II | 29-Sep-18 |
BKF_2018_10 | ABNAAACBNAFA | 12 | 2 | 0 | Nioko II | 29-Sep-18 |
BKF_2018_11 | ABNAAACBNAFA | 12 | 2 | 0 | Nioko II | 29-Sep-18 |
BKF_2018_12 | ABNAAACBNAFA | 12 | 2 | 0 | Nioko II | 29-Sep-18 |
BKF_2018_13 | ABNAAACBNAFA | 12 | 2 | 0 | Nioko II | 29-Sep-18 |
BKF_2018_14 | ABNAAACBNAFA | 12 | 2 | 0 | Nioko II | 29-Sep-18 |
BKF_2018_15 | ABNAAACBNAFA | 12 | 2 | 0 | Nioko II | 29-Sep-18 |
BKF_2018_16 | ABNAAACBNAFA | 12 | 2 | 3 | Saaba | 23-Sep-18 |
BKF_2018_17 | ABNAAACBNAFA | 12 | 2 | 3 | Saaba | 23-Sep-18 |
BKF_2018_18 | ABNAAACBNAFA | 12 | 2 | 3 | Saaba | 23-Sep-18 |
BKF_2018_19 | ABNAAAAACBNAAAAACBNAAAAAAACBNAFA | 32 | 3 | 4 | Tampouy | 11-Oct-18 |
BKF_2018_20 | ABNAAAAACBNAAAAACBNAAAAAAACBNAFA | 32 | 3 | 4 | Tampouy | 11-Oct-18 |
BKF_2018_21 | ABNAAAAACBNAAAAACBNAAAAAAACBNAFA | 32 | 3 | 4 | Tampouy | 11-Oct-18 |