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Table 2 Primers and TaqMan probes used for detection of C. abortus and internal amplification control by real-time PCR

From: Genotyping of Chlamydia abortus using multiple loci variable number of tandem repeats analysis technique

Name

Sequence

Amplicon size (bp)

CpaOMP1-F

CpaOMP1-R

CpaOMP1-Sa

5-GCAACTGACACTAAGTCGGCTACA-3

5-ACAAGCATGTTCAATCGATAAGAGA-3

FAMb- TAAATACCACGAATGGCAAGT

TGGTTTAGCG-TAMRAc

82

EGFP-1-F

EGFP-10-R

EGFP-HEXd

5-GACCACTACCAGCAGAACAC-3

5-CTTGTACAGCTCGTCCATGC-3

HEXd-

AGCACCCAGTCCGCCCTGAGCABHQ1

e

177

  1. a Conventional TaqMan probe
  2. b FAM 6-carboxy-fluorescein
  3. c TAMRA 6-carboxy-tetramethylrhodamin
  4. d HEX hexachlorofluorescein
  5. e Black hole quencher