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Table 2 Results of genotyping using the MST method

From: Molecular detection of Coxiella burnetii in small ruminants and genotyping of specimens collected from goats in Poland

No.

Herd ID

Voivodeship

Type of sample

Ct

real-time PCR

Alleles identified in spacersb

Sequence type

Cox 2

Cox 5

Cox 18

Cox 20

Cox 22

Cox 37

Cox 51

Cox 56

Cox 57

Cox 61

1.

B1

Kuyavia-Pomerania

BTM

29.27

3

6

1

10

4

10

5

61a

2.

C1

Lublin

tissue

29.28

3

2

6

1

5

10

4

10

6

5

61

3.

I1

Greater Poland

BTM

30.94

3

2

5

10

4

10

6

5

61/74a

4.

I2

Greater Poland

BTM

31.18

3

2

6

5

10

10

5

61a

5.

I3

Greater Poland

BTM

31.19

3

2

6

5

10

4

10

6

5

61a

6.

I4

Greater Poland

BTM

29.76

3

2

6

1

5

10

4

10

5

61a

7.

I5

Greater Poland

BTM

29.36

3

2

6

1

5

10

4

10

5

61a

8.

I6

Greater Poland

BTM

30.98

3

1

5

10

10

5

61/74a

9.

J1

West Pomerania

BTM

29.6

3

2

6

1

10

10

5

61a

  1. a Sequence type established based on incomplete allelic profile
  2. bAccording to an online database [25]