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Table 2 Results of genotyping using the MST method

From: Molecular detection of Coxiella burnetii in small ruminants and genotyping of specimens collected from goats in Poland

No. Herd ID Voivodeship Type of sample Ct
real-time PCR
Alleles identified in spacersb Sequence type
Cox 2 Cox 5 Cox 18 Cox 20 Cox 22 Cox 37 Cox 51 Cox 56 Cox 57 Cox 61
1. B1 Kuyavia-Pomerania BTM 29.27 3 6 1 10 4 10 5 61a
2. C1 Lublin tissue 29.28 3 2 6 1 5 10 4 10 6 5 61
3. I1 Greater Poland BTM 30.94 3 2 5 10 4 10 6 5 61/74a
4. I2 Greater Poland BTM 31.18 3 2 6 5 10 10 5 61a
5. I3 Greater Poland BTM 31.19 3 2 6 5 10 4 10 6 5 61a
6. I4 Greater Poland BTM 29.76 3 2 6 1 5 10 4 10 5 61a
7. I5 Greater Poland BTM 29.36 3 2 6 1 5 10 4 10 5 61a
8. I6 Greater Poland BTM 30.98 3 1 5 10 10 5 61/74a
9. J1 West Pomerania BTM 29.6 3 2 6 1 10 10 5 61a
  1. a Sequence type established based on incomplete allelic profile
  2. bAccording to an online database [25]