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Table 4 Distribution of SNP genotypes from eleven significantly associated SNPs with gene annotation within the breeds Anglo-Arabian, Shagya-Arabian, Purebred Arabian, Partbred Arabian, Exmoor Pony, Selle Francais, Lipizzan, French Trotter, and Noriker (NA = missing genotype)

From: Equine vitiligo-like depigmentation in grey horses is related to genes involved in immune response and tumor metastasis

 

Anglo Arabian

Shagya Arabian

Purebred Arabian

Partbred Arabian

Exmoor Pony

Selle Francais

Lipizzan

French trotter

Noriker

Sum

ECA1

AX-104837465

0

7

32

155

21

273

295

315

156

171

1425

1

0

0

0

0

0

0

46

0

2

48

2

0

0

0

0

0

0

4

0

0

4

NA

0

0

0

0

0

0

12

0

1

13

ECA5

AX-104234663

0

7

32

155

21

262

221

344

155

170

1367

1

0

0

0

0

9

72

24

1

3

109

2

0

0

0

0

1

2

0

0

0

3

NA

0

0

0

0

1

0

9

0

1

11

ECA6

AX-104673609

0

6

32

152

20

61

241

243

126

173

1054

1

1

0

3

1

141

51

102

28

1

328

2

0

0

0

0

71

3

23

1

0

98

NA

0

0

0

0

0

0

9

1

0

10

ECA9

AX-104336590

0

6

32

155

21

214

36

338

48

169

1019

1

0

0

0

0

30

109

30

61

4

234

2

0

0

0

0

0

77

0

15

1

93

NA

1

0

0

0

29

73

9

32

0

144

ECA13

AX-104150856

0

7

16

126

18

265

287

361

155

174

1409

1

0

14

28

3

1

7

15

0

0

68

2

0

1

1

0

0

0

0

0

0

2

NA

0

1

0

0

7

1

1

1

0

11

AX-104939678

0

7

27

130

19

273

295

356

156

174

1437

1

0

5

25

2

0

0

21

0

0

53

2

0

0

0

0

0

0

0

0

0

0

AX-104387837

0

7

25

104

17

262

254

353

113

171

1306

1

0

7

47

3

11

41

23

37

3

172

2

0

0

4

1

0

0

0

6

0

11

NA

0

0

0

0

0

0

1

0

0

1

AX-104370576

0

7

25

104

15

261

260

337

79

165

1253

1

0

7

47

4

11

31

33

57

5

195

2

0

0

4

1

0

1

0

20

0

26

NA

0

0

0

1

1

3

7

0

4

16

ECA17

AX-104594172

0

7

28

155

21

273

286

333

155

168

1426

1

0

4

0

0

0

9

33

1

6

53

2

0

0

0

0

0

0

0

0

0

0

NA

0

0

0

0

0

0

11

0

0

11

ECA20

AX-103697053

0

7

27

119

19

272

280

357

156

165

1402

1

0

5

35

2

1

14

12

0

2

71

2

0

0

1

0

0

1

4

0

0

6

NA

0

0

0

0

0

0

4

0

7

11

AX-103235989

0

5

32

61

12

226

234

233

77

166

1046

1

0

0

66

4

47

39

103

62

4

325

2

1

0

11

3

0

2

32

13

1

63

NA

1

0

17

2

0

20

9

4

3

56

 

Sum

7

32

155

21

273

295

377

156

174

1490