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Table 3 Significantly with vitiligo-like depigmentation associated SNPs including information on their position, p-values and annotated genes (genic = SNP located within gene; intergenic = SNP located in a +/− 25 kb window next to the gene)

From: Equine vitiligo-like depigmentation in grey horses is related to genes involved in immune response and tumor metastasis

Chr SNP rs SNP number p-value Position EquCab3 genic gene region genic SNP variant intergenic -25 kb intergenic + 25 kb
9 AX-104336590 rs68729604 1,18E-12 11,650,147      HNF4G
13 AX-104939678 rs1143810305 3,86E-11 40,644,649      OR2C1
13 AX-104150856 rs1145360759 1,88E-10 36,289,780     LITAFD CARHSP1
23 AX-104329626 rs1148154226 1,14E-09 42,288,906      
5 AX-104234663 rs1138936192 3,13E-09 35,033,603     OR6N2 OR6N1
7 AX-104687221 rs1150319641 1,03E-08 32,228,883      
1 AX-103991294 rs1138560853 1,03E-08 164,725,011      
15 AX-103257076 rs1151004238 1,27E-08 59,455,614      
13 AX-104370576 rs1141793424 1,80E-08 41,503,474     PDPK1 AMDHD2
13 AX-104387837 rs68927375 1,88E-08 41,408,155 KCTD5 13:41387118–41,414,697 intronic (protein coding) PDPK1
7 AX-103298246 rs1149149950 4,21E-08 23,815,408      
15 AX-104882695 rs69007837 6,30E-08 56,537,568      
20 AX-103235989 rs1147491448 6,38E-08 24,186,084 CARMIL1 20:23987962–24,299,401 intronic (protein coding)  
17 AX-104594172 rs1145363295 9,97E-08 21,505,125 PHF11 17:21489896–21,518,337 intronic (exon 5) RCBTB1 SETDB2
20 AX-103697053 rs1148983319 1,06E-07 57,714,448 PTP4A1 20:57711442–57,718,044 intron 3   
6 AX-104673609 rs1143140285 1,09E-07 36,234,703     CLEC4D  
1 AX-104837465 rs1137469145 1,14E-07 170,926,834 NUBPL 1:170866249–171,111,362 intronic (protein coding)