Table 2 Genome and ORFs comparisons between RnGZ37-2018, RnGZ40-2018 and other representative WENV strains
From: Molecular detection and genetic characterization of Wenzhou virus in rodents in Guangzhou, China
Strains | Segment/ORFs | % nt/aa sequence identities within WENVa | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
RnGZ37-2018 | Cambodian C617 | Cambodian C649 | 9–24 | YCB1 | Rn366 | Rn242 | MYR039 | G107 | PL/DK | RnYM3-2016 | ||
RnGZ37-2018 | L | / | 87.5 | 87.3 | 91.5 | 84.4 | 87.9 | 88.9 | 86.8 | 87.5 | 89.2 | 84.6 |
RdRp | / | 87.7/91.9 | 87.6/91.7 | 91.1/93.4 | 84.7/89.6 | 89.5/93.6 | 89.3/93.3 | 87.2/91.7 | 87.6/91.7 | 89.5/93.1 | 84.7/89.8 | |
ZP | / | 86.2/83.2 | 86.6/94.1 | 91.7/97.0 | 83.0/93.1 | 89.9/91.1 | 81.2/85.1 | 86.2/89.1 | 88.4/90.1 | 87.3/89.1 | 85.5/94.1 | |
S | / | 86.7 | 86.6 | 93.3 | 85.6 | 88.5 | 87.7 | 87.1 | 88.2 | 86.4 | 83.6 | |
NP | / | 88.6/95.4 | 88.7/95.6 | 93.9/96.6 | 86.7/94.7 | 89.1/95.6 | 88.8/94.5 | 88.7/94.9 | 89.6/93.8 | 88.4/93.3 | 86.2/94.5 | |
GPC | / | 85.5/93.1 | 85.2/92.7 | 90.9/94.3 | 84.8/93.1 | 86.7/91.9 | 88.2/93.5 | 85.5/93.3 | 87.4/94.9 | 86.9/92.1 | 84.6/92.9 | |
RnGZ40-2018 | L | 96.0 | 87.3 | 87.1 | 91.4 | 84.2 | 87.6 | 88.7 | 86.7 | 87.3 | 88.9 | 84.4 |
RdRp | 95.8/97.6 | 87.5/91.7 | 87.4/91.5 | 90.9/93.3 | 84.4/89.4 | 89.1/93.4 | 89.0/93.1 | 86.9/91.4 | 87.4/91.7 | 89.1/92.8 | 84.5/89.3 | |
ZP | 98.6/97.0 | 86.6/84.2 | 87.0/95.0 | 92.4/98.0 | 83.3/94.1 | 90.2/92.1 | 81.5/86.1 | 86.6/90.1 | 88.8/91.1 | 87.7/90.1 | 85.9/95.0 | |
S | 95.1 | 86.9 | 86.7 | 92.7 | 85.2 | 88.7 | 87.7 | 86.8 | 88.1 | 86.8 | 83.5 | |
NP | 96.0/97.2 | 88.8/96.1 | 88.9/96.3 | 93.6/97.4 | 86.3/95.1 | 90.1/96.6 | 89.6/95.8 | 88.6/95.2 | 89.8/94.9 | 89.3/94.5 | 86.2/95.1 | |
GPC | 93.5/95.1 | 85.3/93.1 | 85.1/92.7 | 91.8/93.7 | 85.2/92.5 | 87.5/91.5 | 89.2/92.9 | 85.9/93.1 | 87.8/93.5 | 87.1/91.5 | 84.7/91.9 | |