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Fig. 2 | BMC Veterinary Research

Fig. 2

From: Rabbit haemorrhagic disease virus Lagovirus europaeus/GI.1d strain: genome sequencing, in vivo virus replication kinetics, and viral dose effect

Fig. 2

Maximum likelihood (ML) phylogenetic tree of lagovirus GI.1 and GI.2 VP60 gene nucleotide sequences (n = 121). The tree was rooted using a GII.2/EBHSV VP60 sequence (accession number AM933650). The sequences were selected with Jalview software (redundancy threshold of 98%) from the 631 complete lagovirus GI.1 and GI.2 VP60 gene sequences available in the GenBank database at the time of analysis. GI genotypes and variants are represented as collapsed in order to reduce the tree size and highlight the newly identified sequence. The sample newly sequenced in this study is shown in bold, and significant (greater than 70) bootstrap values for 1000 replicates are shown in italics after each node. Scale bar indicates nucleotide substitutions per site

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