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Table 1 Diagnostic samples included in the study

From: Cattle connection: molecular epidemiology of BVDV outbreaks via rapid nanopore whole-genome sequencing of clinical samples

  Sample ID Date State Species ST Matrix Cq Read Count Total Reads Mapped Reads
Ligation Rapid
1 2016BVD01435 2016 NI Cattle 1b Plasma 28.8 38,635 442,964 481,599 48,145
2 2016BVD01436 2016 NI Sheep 1b Plasma 32.6 60,920 89,008 149,928 57,290
3 2018BVD01695 2018 NI Cattle 1f Plasma 19.2 66,753 850,149 916,902 824,299
4 2018BVD06212 2018 NW Cattle 1d EDTA blood 22.6 89,898 1,255,060 1,344,958 1,277,809
5 2018BVD06214 2018 NW Cattle 1d EDTA blood 21.7 88,264 830,138 918,402 870,123
6 2019BVD04871 2019 NW Cattle 1d Plasma 24.0 96,192 981,673 1,077,865 1,040,017
7 2019BVD04882 2019 NW Cattle 1d Plasma 21.4 118,619 1,226,328 1,344,947 1,278,462
8 2019BVD04888 2019 NW Cattle 1d EDTA blood 19.4 83,659 707,704 791,363 427,131
9 2019BVD04889 2019 NW Cattle 1d EDTA blood 28.0 157,898 314,612 472,510 229,627
10 2017BVD04597 2017 BW Cattle 1b Ear notch 24.8 52,299 272,345 324,644 302,107
11 D66/11–28 2011 TH Cattle 2a EDTA blood 24.4 77,725 465,003 542,728 521,038
12 TV02/13, T136 2013 - Cattle 2c Plasma 21.5 67,172 327,089 394,261 385,679
  1. Legend: Selected samples with sample information, read counts divided between the Ligation Sequencing Kit and the Rapid Barcoding Kit, and mapped reads. ST Subtype, NI Lower Saxony, NW North Rhine-Westphalia, BW Baden-Württemberg, TH Thuringia