blaTEM (Resistance to β-lactam)
|
Fa-GCGGAACCCCTATTTG
|
35 cycles: 95°C (30 s), 52°C (30 s), 72°C (60 s)
|
963
|
[11]
|
Rb-ACCAATGCTTAATCAGTGAG
|
blaSHV (Resistance to β-lactam)
|
F-TTATCTCCCTGTTAGCCACC
|
35 cycles: 95°C (30 s), 54°C (30 s), 72°C (30 s)
|
795
|
[12]
|
R-GATTTGCTGATTTCGCTCGG
|
blaCTX-M (Resistance to β-lactam)
|
F-CGATGTGCAGTACCAGTAA
|
35 cycles: 95°C (30 s), 60°C (30 s), 72°C (60 s)
|
585
|
[13]
|
R-TTAGTGACCAGAATCAGCGG
|
sulI (Resistance to sulfonamide)
|
F-TTCGGCATTCTGAATCTCAC
|
30 cycles: 94°C (30 s), 58°C (30 s), 72°C (60 s)
|
822
|
[14]
|
R-ATGATCTAACCCTCGGTCTC
|
sulII (Resistance to sulfonamide)
|
F-GCGCTCAAGGCAGATGGCATT
|
30 cycles: 94°C (30 s), 69°C (30 s), 72°C (60 s)
|
293
|
[15]
|
R-GCGTTTGATACCGGCACCCGT
|
dhfrI (Resistance to trimethoprim)
|
F-AAGAATGGAGTTATCGGGAATG
|
30 cycles: 94°C (30 s), 55°C (30 s), 72°C (60 s)
|
391
|
[14]
|
R-GGGTAAAAACTGGCCTAAAATTG
|
dhfrV (Resistance to trimethoprim)
|
F-CTGCAAAAGCGAAAAACGG
|
35 cycles: 94°C (30 s), 58°C (30 s), 72°C (60 s)
|
432
|
[14]
|
R-AGCAATAGTTAATGTTTGAGCTAAAG
|
aadA (Resistance to aminoglycoside)
|
F-TGATTTGCTGGTTACGGTGAC
|
30 cycles: 94°C (30 s), 58°C (30 s), 72°C (60 s)
|
284
|
[14]
|
R-CGCTATGTTCTCTTGCTTTTG
|
stx1 (STEC)
|
F-CAGTTAATGTGGTGGCGAAGG
|
35 cycles: 94°C (90 s), 60°C (90 s), 72°C (90 s)
|
348
|
[16]
|
R-CACCAGACAATGTAACCGCTG
|
stx2 (STEC)
|
F-ATCCTATTCCCGGGAGTTTACG
|
35 cycles: 94°C (90 s), 60°C (90 s), 72°C (90 s)
|
584
|
[16]
|
R-GCGTCATCGTATACACAGGAGC
|
eae (EPEC)
|
F-TCAATGCAGTTCCGTTATCAGTT
|
35 cycles: 94°C (90 s), 60°C (90 s), 72°C (90 s)
|
482
|
[16]
|
R-GTAAAGTCCGTTACCCCAACCTG
|
stII (ETEC)
|
F-AAAGGAGAGCTTCGTCACATTTT
|
35 cycles: 94°C (90 s), 60°C (90 s), 72°C (90 s)
|
129
|
[16]
|
R-AATGTCCGTCTTGCGTTAGGAC
|
lt (ETEC)
|
F-GCACACGGAGCTCCTCAGTC
|
35 cycles: 94°C (90 s), 60°C (90 s), 72°C (90 s)
|
218
|
[16]
|
R-TCCTTCATCCTTTCAATGGCTTT
|
ipaH (EIEC)
|
F-CTCGGCACGTTTTAATAGTCTGG
|
35 cycles: 94°C (90 s), 60°C (90 s), 72°C (90 s)
|
933
|
[16]
|
R-GTGGAGAGCTGAAGTTTCTCTGC
|
aafII (EAEC)
|
F-CACAGGCAACTGAAATAAGTCTGG
|
35 cycles: 94°C (90 s), 60°C (90 s), 72°C (90 s)
|
378
|
[16]
|
R-ATTCCCATGATGTCAAGCACTTC
|
daaE (DAEC)
|
F-GAACGTTGGTTAATGTGGGGTAA
|
35 cycles: 94°C (90 s), 60°C (90 s), 72°C (90 s)
|
542
|
[16]
|
R-TATTCACCGGTCGGTTATCAGT
|
arpA (phylo-grouping)
|
F-AACGCTATTCGCCAGCTTGC
|
30 cycles: 94°C (5 s), 59°C (20 s) and 1 cycle 72°C (5 min)
|
400
|
[5]
|
R-TCTCCCCATACCGTACGCTA
|
chuA (phylo-grouping)
|
F-ATGGTACCGGACGAACCAAC
|
30 cycles: 94°C (5 s), 59°C (20 s) and 1 cycle 72°C (5 min)
|
288
|
[5]
|
R-TGCCGCCAGTACCAAAGACA
|
yjaA (phylo-grouping)
|
F-CAAACGTGAAGTGTCAGGAG
|
30 cycles: 94°C (5 s), 59°C (20 s) and 1 cycle 72°C (5 min)
|
211
|
[5]
|
R-AATGCGTTCCTCAACCTGTG
|
TspE4.C2 (phylo-grouping)
|
F-CACTATTCGTAAGGTCATCC
|
30 cycles: 94°C (5 s), 59°C (20 s) and 1 cycle 72°C (5 min)
|
152
|
[5]
|
R-AGTTTATCGCTGCGGGTCGC
|
arpA-group E (phylo-grouping)
|
F-GATTCCATCTTGTCAAAATATGCC
|
30 cycles: 94°C (5 s), 57°C (20 s) and 1 cycle 72°C (5 min)
|
301
|
[5]
|
R-GAAAAGAAAAAGAATTCCCAAGAG
|
trpA-group C (phylo-grouping)
|
F-AGTTTTATGCCCAGTGCGAG
|
30 cycles: 94°C (5 s), 59°C (20 s) and 1 cycle 72°C (5 min)
|
219
|
[5]
|
R-TCTGCGCCGGTCACGCCC
|