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Table 5 Numbers of differentially expressed genes for the factors of Isolate, TVclass, and WUR genotype among the 203 genes that were common to the NanoString and RNA-seq analyses

From: Gene expression in tonsils in swine following infection with porcine reproductive and respiratory syndrome virus

Factor

Without cell enrichments

With cell enrichments

RNA-seq

NanoString

Overlap

RNA-seq

NanoString

Overlap

Isolate

18

83

12

2

33

0

TVclass

0

41

0

0

30

0

WUR

0

0

0

0

25

0

Isolate*WUR

-a

-a

-a

1

69

1

TVclass*WUR

-a

-a

-a

0

32

0

  1. a This factor was not included in the model