Skip to main content

Table 3 Comparison of the number of genes that were differentially expressed based on the RNA-seq and NanoString data for the effect of WUR genotype within Isolate and TVclass

From: Gene expression in tonsils in swine following infection with porcine reproductive and respiratory syndrome virus

 

RNA-seqa

NanoStringa

log2FC > 0b

log2FC < 0c

log2FC > 0b

log2FC < 0c

KS06 (AB vs AA)

74

3

14

37

NVSL (AB vs AA)

0

0

26

12

Low-TVclass (AB vs AA)

1

0

14

7

High-TVclass (AB vs AA)

3

1

7

29

  1. a The numbers of differentially expressed genes (q < 0.1) for WUR genotypes within Isolate or TVclass, based on analysis of the RNA-seq and NanoString data, using the model with cell composition
  2. b Gene expression AB>AA within Isolate or TVclass
  3. c Gene expression AB<AA within Isolate or TVclass
Back to article page

BMC Veterinary Research

ISSN: 1746-6148

Contact us