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Table 2 Primers used in this study

From: Renibacterium salmoninarum and Mycobacterium spp.: two bacterial pathogens present at low levels in wild brown trout (Salmo trutta fario) populations in Austrian rivers

Primer name

Target gene

Sequence (5′ to 3′)

Amplicon size (bp)

Tm (°C)

Reference

P3 (outer F)

msa

AGCTTCGCAAGGTGAAGGG

320

58.8

[48]

M21 (outer R)

msa

GCAACAGGTTTATTTGCCGGG

320

59.8

[48]

P4 (inner F)

msa

ATTCTTCCACTTCAACAGTACAAGG

320

59.7

[48]

M38 (inner R)

msa

CATTATCGTTACACCCGAAACC

320

58.4

[48]

Myco 16 F1

16S rRNA

AGCTCGTAGGTGGTTTGTCG

611

59.4

This study

Myco 16 R1

16S rRNA

CCACCTTCCTCCGAGTTGAC

611

61.4

This study

T39 (outer F)

16S rRNA

GCGAACGGGTGAGTAACACG

300

63.9

[49]

T13 (outer R)

16S rRNA

TGCACACAGGCCACAAGGGA

300

68.5

[49]

T43 (inner F)

16S rRNA

AATGGGCGCCAAGCCTGATG

300

66.7

[49]

T531 (inner R)

16S rRNA

ACCGCTACACCAGGAAT

300

53.7

[49]

Tb11

Hsp65

ACCAACGATGGTGTGTCCAT

439

57.3

[50]

Tb12

Hsp65

CTTGTCGAACCGCATACCCT

439

59.4

[50]