Table 1 M. bovis strains used in this study and their STs
Sample ID | Year of isolation | Origin | Host | Sample type | Clinical status | adh1 | gltX | gpsA | gyrB | pta2 | tdk | tkt | ST | Source |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PG45 | 1961 | American | Dairy cow | Milk | Clinical mastitis | 3 | 2 | 4 | 2 | 1 | 3 | 2 | 17 | This study |
HB0801 | 2008 | Hubei | Beef cattle | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
Hubei-1 | 2008 | Hubei | Cattle | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 4 | 4 | 26 | MLST web |
EZ-8-NHD0962 | 2008 | Hubei | Bovine | Lung | Pneumonia | 4 | 5 | 2 | 3 | 5 | 3 | 4 | 32 | MLST web |
CQ-W70 | 2009 | Chongqing | Bovine | Lung | Pneumonia | 4 | 5 | 2 | 3 | 5 | 3 | 4 | 32 | MLST web |
EZ-2 | 2008 | Hubei | Bovine | Lung | Pneumonia | 4 | 3 | 2 | 12 | 5 | 3 | 4 | 43 | MLST web |
NHD0986 | 2008 | Hunan | Bovine | Lung | Pneumonia | 4 | 3 | 2 | 12 | 5 | 3 | 4 | 43 | MLST web |
NMH7 | 2018 | Inner Mongolia | Bovine | Milk | Mastitis | 10 | 3 | 6 | 13 | 21 | 6 | 10 | 173 | MLST web |
NMH03 | 2018 | Inner Mongolia | Bovine | Milk | Mastitis | 10 | 3 | 6 | 13 | 21 | 6 | 10 | 173 | MLST web |
HBHS01 | 2018 | Hubei | Bovine | Milk | Mastitis | 4 | 3 | 2 | 3 | 5 | 7 | 4 | 172 | MLST web |
Shaanxi04 | 2018 | Shaanxi | Bovine | Milk | Mastitis | 4 | 3 | 2 | 3 | 5 | 7 | 4 | 172 | MLST web |
NX001 | 2009 | Wuzhong | Dairy cow | Milk | Clinical Mastitis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX002 | 2010 | Wuzhong | Dairy cow | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX003 | 2010 | Wuzhong | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX004 | 2010 | Wuzhong | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX005 | 2010 | Wuzhong | Dairy cow | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX006 | 2010 | Shizuishan | Dairy cow | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX007 | 2010 | Wuzhong | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX008 | 2011 | Guyuan | Beef cattle | Lung | Pneumonia | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX009 | 2011 | Yinchuan | Dairy cow | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX010 | 2011 | Wuzhong | Dairy cow | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX011 | 2011 | Yinchuan | Dairy cow | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX012 | 2012 | Wuzhong | Dairy cow | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX013 | 2012 | Wuzhong | Dairy cow | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX014 | 2012 | Guyuan | Beef cattle | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX015 | 2013 | Wuzhong | Beef cattle | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX016 | 2013 | Yinchuan | Dairy cow | Milk | Clinical mastitis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX017 | 2013 | Shizuishan | Dairy cow | Milk | Clinical mastitis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX018 | 2013 | Yinchuan | Dairy cow | Milk | Clinical mastitis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX019 | 2013 | Yinchuan | Dairy cow | Milk | Clinical mastitis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX020 | 2013 | Yinchuan | Dairy cow | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX021 | 2013 | Guyuan | Beef cattle | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX022 | 2013 | Yinchuan | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX023 | 2014 | Yinchuan | Dairy cow | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX024 | 2014 | Yinchuan | Dairy cow | Milk | Clinical mastitis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX025 | 2014 | Yinchuan | Dairy cow | Lung | Pneumonia | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX026 | 2014 | Yinchuan | Dairy cow | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX027 | 2014 | Yinchuan | Dairy cow | Lung | Pneumonia | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX028 | 2014 | Yinchuan | Dairy cow | Lung | Pneumonia | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX029 | 2014 | Shizuishan | Beef cattle | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX030 | 2014 | Yinchuan | Dairy cow | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX031 | 2014 | Yinchuan | Dairy cow | Milk | Clinical mastitis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX032 | 2014 | Yinchuan | Dairy cow | Milk | Clinical mastitis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX033 | 2015 | Wuzhong | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX034 | 2015 | Wuzhong | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX035 | 2015 | Wuzhong | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX036 | 2015 | Wuzhong | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX037 | 2015 | Wuzhong | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX038 | 2015 | Shizuishan | Dairy cow | Milk | Clinical Mastitis | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX039 | 2016 | Guyuan | Beef cattle | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX040 | 2016 | Guyuan | Beef cattle | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX041 | 2016 | Guyuan | Beef cattle | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX042 | 2016 | Guyuan | Beef cattle | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX043 | 2017 | Yinchuan | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX044 | 2017 | Yinchuan | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX045 | 2017 | Yinchuan | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX046 | 2018 | Guyuan | Beef cattle | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX047 | 2018 | Yinchuan | Dairy calf | Lung | Pneumonia | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX048 | 2018 | Yinchuan | Dairy calf | Lung | Pneumonia | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX049 | 2018 | Wuzhong | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX050 | 2018 | Wuzhong | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX051 | 2018 | Yinchuan | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX052 | 2018 | Yinchuan | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX053 | 2018 | Yinchuan | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX054 | 2018 | Yinchuan | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX055 | 2018 | Yinchuan | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX056 | 2018 | Yinchuan | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX057 | 2018 | Yinchuan | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX058 | 2018 | Yinchuan | Dairy calf | Joint fluid | Arthritis | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX059 | 2018 | Yinchuan | Dairy calf | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX060 | 2018 | Wuzhong | Dairy calf | Lung | Pneumonia | 4 | 3 | 2 | 3 | 5 | 3 | 4 | 10 | This study |
NX061 | 2018 | Yinchuan | Dairy calf | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX062 | 2018 | Yinchuan | Dairy calf | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX063 | 2018 | Yinchuan | Dairy calf | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX064 | 2018 | Yinchuan | Dairy calf | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |
NX065 | 2018 | Yinchuan | Dairy calf | Nose Swab | Pneumonia | 4 | 3 | 2 | 3 | 17 | 3 | 4 | 134 | This study |