Table 3 Nucleotide sequence alignment of gB, gG and gJ gene fragments from the isolates in Myanmar, vaccines strains and other ILTV strains
Name of strains | Nucleotide position from ATGa | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
gB | gG | gJ | |||||||||||
1931 | 66 | 102 | 173 | 292 | 344 | 461 | 484 | 765 | 777 | 832 | 878 | 894 | |
Farm Ya-1 | C | G | C | T | C | T | A | C | C | C | A | T | G |
Farm Ya-2 | -b | – | – | – | – | – | – | – | – | – | – | – | – |
Farm Ya-4 | – | – | – | – | – | – | – | – | – | – | – | – | – |
Farm Ya-5 | T | – | G | – | – | – | – | – | – | T | – | – | – |
Farm Ya-8 | – | – | – | – | – | – | – | – | – | – | – | – | – |
Farm Ma-2 | – | – | – | – | – | – | – | – | – | – | – | – | – |
MF417811_USA/14.939 | – | A | G | – | – | – | – | – | – | T | – | – | – |
JN542533_USA/1874C5 | – | – | G | – | A | – | – | – | T | T | – | – | – |
JN542534_USA/USDA | – | A | G | – | – | – | – | T | – | T | – | C | – |
JN542535_USA/81658 | T | A | G | – | – | – | – | T | – | T | – | C | – |
JN542536_USA/63140 | – | A | G | – | – | – | – | – | – | T | – | – | – |
JN804827_Australia/CL9 | – | A | G | – | – | – | – | – | – | T | – | – | – |
JX646898_Australia/V1–99 | – | – | G | G | A | G | – | – | T | T | – | – | – |
JN596963_Australia/A20 vaccine | – | – | G | G | A | G | – | – | T | T | – | – | – |
HQ630064_Australia/Serva vaccine | T | A | G | – | – | – | – | – | – | T | – | – | – |
JX458822_China/LJS09 | T | A | G | – | – | – | – | – | – | T | – | – | – |
JX458823_China/WG | – | – | G | G | A | G | – | – | T | T | – | – | – |
JX458824_China/K317 vaccine | T | A | G | – | – | – | – | – | – | – | – | – | – |
MH937564_Korea | T | A | G | – | – | – | – | – | – | T | – | – | – |
MH937565_Korea | – | – | G | G | A | G | – | – | T | T | – | – | – |
MH937566_Korea | T | A | G | – | – | – | – | – | – | – | – | – | – |
JN580312/TCO vaccine-IVAX | T | A | G | – | – | – | – | T | – | T | – | C | – |
JN580313/CEO vaccine-TRVX | T | A | G | – | – | – | – | – | – | – | – | – | – |
NC006623_USA | T | A | G | – | – | – | – | T | – | T | – | C | – |