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Table 2 Nucleotide sequence alignment of ICP4 gene fragments from the isolates in Myanmar, vaccine strains and other ILTV strains

From: Molecular detection and genetic characterization of infectious laryngotracheitis virus in poultry in Myanmar

Name of strains Nucleotide position from ATG a
ICP4 fragment 1 (positions 181 to 868) ICP4 fragment 2 (positions 3645 to 4268)
259–270 438 456 594 597 611 795 811 3879 3905 3957 3981 4012 4047
Farm Ya-1 * b A A C A * G G A T C C A A
Farm Ya-2 * -c – – – * – – – – – – – –
Farm Ya-4 * – – – – * – – – – – – – –
Farm Ya-5 * – – – – * – – – – – – – –
Farm Ya-8 * – – – – * – – – – – – – –
Farm Ma-2 * – – – – * – – – – – – – –
MF417811_USA/14.939 * – – – – * – – – – – – – –
JN542533_USA/1874C5 GCGGCCCAAGAC G G * G G A A – C T – – G
JN542534_USA/USDA GCGGCCCAAGAC G – – G * – – – C T T G G
JN542535_USA/81658 GCGGCCCAAGAC G – – G * – – – C T T G G
JN542536_USA/63140 * – – – – * – – – – – – – –
JN804827_Australia/CL9 * – – – – * – – – – – – – –
JX646898_Australia/V1–99 * – – – – * – – – C – – – G
JN596963_Australia/A20 vaccine GCGGCCCAAGAC G G – G * A A – C T – – G
HQ630064_Australia/Serva vaccine * – – – – * – – – – – – – –
JX458822_China/LJS09 * – – – – * – – – – – – – –
JX458823_China/WG * – – – – * – – T – – – – –
JX458824_China/K317 vaccine * – – – – * – – T – – – – –
MH937564_Korea * – – – – * – – – – – – – –
MH937565_Korea * G G – G * A A – – – – – –
MH937566_Korea * – – – – * – – – – – – – –
JN580312/TCO vaccine-IVAX GCGGCCCAAGAC G – – G * – – – C T T G G
JN580313/CEO vaccine-TRVX * – – – – * – – – – – – – –
NC006623_USA GCGGCCCAAGAC G G * G G A A – C T – – G
  1. aThe ICP4 gene sequence with Genbank accession number NC_006623 was taken as a reference
  2. b* Deletions within the sequences
  3. c-Regions where the sequences are identical to those of Farm Ya-1
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BMC Veterinary Research

ISSN: 1746-6148

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