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Table 2 Nucleotide sequence alignment of ICP4 gene fragments from the isolates in Myanmar, vaccine strains and other ILTV strains

From: Molecular detection and genetic characterization of infectious laryngotracheitis virus in poultry in Myanmar

Name of strains Nucleotide position from ATG a
ICP4 fragment 1 (positions 181 to 868) ICP4 fragment 2 (positions 3645 to 4268)
259–270 438 456 594 597 611 795 811 3879 3905 3957 3981 4012 4047
Farm Ya-1 * b A A C A * G G A T C C A A
Farm Ya-2 * -c *
Farm Ya-4 * *
Farm Ya-5 * *
Farm Ya-8 * *
Farm Ma-2 * *
MF417811_USA/14.939 * *
JN542533_USA/1874C5 GCGGCCCAAGAC G G * G G A A C T G
JN542534_USA/USDA GCGGCCCAAGAC G G * C T T G G
JN542535_USA/81658 GCGGCCCAAGAC G G * C T T G G
JN542536_USA/63140 * *
JN804827_Australia/CL9 * *
JX646898_Australia/V1–99 * * C G
JN596963_Australia/A20 vaccine GCGGCCCAAGAC G G G * A A C T G
HQ630064_Australia/Serva vaccine * *
JX458822_China/LJS09 * *
JX458823_China/WG * * T
JX458824_China/K317 vaccine * * T
MH937564_Korea * *
MH937565_Korea * G G G * A A
MH937566_Korea * *
JN580312/TCO vaccine-IVAX GCGGCCCAAGAC G G * C T T G G
JN580313/CEO vaccine-TRVX * *
NC006623_USA GCGGCCCAAGAC G G * G G A A C T G
  1. aThe ICP4 gene sequence with Genbank accession number NC_006623 was taken as a reference
  2. b* Deletions within the sequences
  3. c-Regions where the sequences are identical to those of Farm Ya-1