Table 2 Nucleotide sequence alignment of ICP4 gene fragments from the isolates in Myanmar, vaccine strains and other ILTV strains
Name of strains | Nucleotide position from ATG a | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ICP4 fragment 1 (positions 181 to 868) | ICP4 fragment 2 (positions 3645 to 4268) | |||||||||||||
259–270 | 438 | 456 | 594 | 597 | 611 | 795 | 811 | 3879 | 3905 | 3957 | 3981 | 4012 | 4047 | |
Farm Ya-1 | * b | A | A | C | A | * | G | G | A | T | C | C | A | A |
Farm Ya-2 | * | -c | – | – | – | * | – | – | – | – | – | – | – | – |
Farm Ya-4 | * | – | – | – | – | * | – | – | – | – | – | – | – | – |
Farm Ya-5 | * | – | – | – | – | * | – | – | – | – | – | – | – | – |
Farm Ya-8 | * | – | – | – | – | * | – | – | – | – | – | – | – | – |
Farm Ma-2 | * | – | – | – | – | * | – | – | – | – | – | – | – | – |
MF417811_USA/14.939 | * | – | – | – | – | * | – | – | – | – | – | – | – | – |
JN542533_USA/1874C5 | GCGGCCCAAGAC | G | G | * | G | G | A | A | – | C | T | – | – | G |
JN542534_USA/USDA | GCGGCCCAAGAC | G | – | – | G | * | – | – | – | C | T | T | G | G |
JN542535_USA/81658 | GCGGCCCAAGAC | G | – | – | G | * | – | – | – | C | T | T | G | G |
JN542536_USA/63140 | * | – | – | – | – | * | – | – | – | – | – | – | – | – |
JN804827_Australia/CL9 | * | – | – | – | – | * | – | – | – | – | – | – | – | – |
JX646898_Australia/V1–99 | * | – | – | – | – | * | – | – | – | C | – | – | – | G |
JN596963_Australia/A20 vaccine | GCGGCCCAAGAC | G | G | – | G | * | A | A | – | C | T | – | – | G |
HQ630064_Australia/Serva vaccine | * | – | – | – | – | * | – | – | – | – | – | – | – | – |
JX458822_China/LJS09 | * | – | – | – | – | * | – | – | – | – | – | – | – | – |
JX458823_China/WG | * | – | – | – | – | * | – | – | T | – | – | – | – | – |
JX458824_China/K317 vaccine | * | – | – | – | – | * | – | – | T | – | – | – | – | – |
MH937564_Korea | * | – | – | – | – | * | – | – | – | – | – | – | – | – |
MH937565_Korea | * | G | G | – | G | * | A | A | – | – | – | – | – | – |
MH937566_Korea | * | – | – | – | – | * | – | – | – | – | – | – | – | – |
JN580312/TCO vaccine-IVAX | GCGGCCCAAGAC | G | – | – | G | * | – | – | – | C | T | T | G | G |
JN580313/CEO vaccine-TRVX | * | – | – | – | – | * | – | – | – | – | – | – | – | – |
NC006623_USA | GCGGCCCAAGAC | G | G | * | G | G | A | A | – | C | T | – | – | G |