Table 2 List of the representative of all 24 known ASFV isolates from different locations and isolates characterized from this study used and ASFV genetically characterized in the present study based on partial B646L (p72) genotypes for evolutionary analysis
From: Persistent domestic circulation of African swine fever virus in Tanzania, 2015–2017
Host species | Isolate | Year of Isolation | Town/District | Country | GenBank Accession number | p72 genotype | Reference |
|---|---|---|---|---|---|---|---|
Pig | TAN/10/Kyela | 2010 | Kyela | Tanzania | JX391987 | II | [17] |
Pig | TAN/11/Ludewa | 2011 | Ludewa | Tanzania | JX391990 | II | [17] |
Pig | TAN/12/Ifakara | 2012 | Ifakara | Tanzania | JX391992 | II | [17] |
Pig | TAN/13/Iringa | 2013 | Iringa | Tanzania | KF834193 | II | Unpublished |
DP | CN201801 | 2018 | Shenbei | China | MH722357 | II | [15] |
WB | Belgium/2018/Etalle | 2018 | Etalle | Belgium | MH998358 | II | [26] |
DP | Abk07 | 2007 | Gulripish | Georgia | JX857509 | II | [13] |
DP | Tver0712/Les | 2012 | Lesnoi | Russia | KJ627210 | II | [13] |
DP | Bel13/Grodno | 2013 | Grodno | Belarus | KJ627214 | II | [13] |
EWB | LT14/1482 | 2014 | Alytus County | Lithuania | KJ627216 | II | [13] |
EWB | Pol14/Krus | 2014 | Kruszyniany | Poland | KJ627218 | II | [13] |
DP | TAN/16/Mbarali | 2016 | Mbarali | Tanzania | MF437296 | II | This study |
DP | TAN/16/Tukuyu | 2016 | Tukuyu | Tanzania | MF437295 | II | This study |
DP | TAN/16/Uyole | 2016 | Uyole | Tanzania | MF437294 | II | This study |
DP | TAN/17/Kalambo | 2017 | Kalambo | Tanzania | MF437304 | II | This study |
DP | TAN/17/Ileje | 2017 | Ileje | Tanzania | MF437301 | II | This study |
DP | TAN/17/Mbozi | 2017 | Mbozi | Tanzania | MF437303 | II | This study |
DP | TAN/17/Kongwa | 2017 | Kongwa | Tanzania | MF437299 | II | This study |
DP | TAN/17/Dodoma | 2017 | Dodoma | Tanzania | MF437309 | II | This study |
DP | TAN/17/Mpwapwa | 2017 | Mpwapwa | Tanzania | MF437307 | II | This study |
DP | TAN/17/Gairo | 2017 | Gairo | Tanzania | MF437302 | II | This study |
DP | TAN/17/Mbagala | 2017 | Mbagala | Tanzania | MF437300 | II | This study |
DP | TAN/17/Mazimbu | 2017 | Mazimbu | Tanzania | MF437306 | II | This study |
DP | TAN/17/Mzumbe | 2017 | Mzumbe | Tanzania | MF437310 | II | This study |
DP | TAN/17/Morogoro | 2017 | Morogoro | Tanzania | MF437305 | II | This study |
DP | TAN/17/Kibaha | 2017 | Kibaha | Tanzania | MF437308 | II | This study |
DP | TAN/15/Bukoba | 2015 | Bukoba | Tanzania | MF437290 | IX | This study |
DP | TAN/16/Magu | 2016 | Magu | Tanzania | MF437297 | IX | This study |
DP | Ug03H.2 | 2003 | Hoima | Uganda | FJ154429 | IX | [27] |
WH | Ken08WH/8 | 2008 | Machakos | Kenya | HM745287 | IX | [19] |
DP | CON09/Abo | 2009 | Abo, Cuvette | Rep. Congo | HQ645946 | IX | [19] |
DP | TAN 2005.1 | 2005 | Mwanza | Tanzania | JX403640 | IX | Unpublished |
DP | TAN/16/Ngara | 2016 | Ngara | Tanzania | MF437293 | X | This study |
DP | TAN/16/Babati | 2016 | Babati | Tanzania | MF437298 | X | This study |
DP | TAN/15/Mwanza | 2015 | Mwanza | Tanzania | MF437291 | X | This study |
DP | TAN/15/Manyoni | 2015 | Manyoni | Tanzania | MF437292 | X | This study |
DP | TAN/15/Kigoma | 2015 | Kigoma | Tanzania | MF437289 | X | This study |
DP | BUR/1/84 | 1984 | NK | Burundi | AF449463 | X | [11] |
WH | TAN/Kwh12 | 1968 | Serengeti National Park | Tanzania | AF301546 | X | [24] |
Tk | KIRT/894 | 1989 | Serengeti National Park | Tanzania | AY351513 | X | [24] |
WH | KIRW/891 | 1989 | Serengeti National Park | Tanzania | AY351514 | X | [24] |
DP | BUR/903 | 1990 | Muyinga | Burundi | AY351525 | X | [24] |
Tk | Ken08Tk.2/1 | 2008 | Machakos | Kenya | HM745275 | X | [19] |
Tk | TAN 2004.1 | 2004 | Kigoma | Tanzania | JX403648 | X | Unpublished |
WH | TAN/09/Longido | 2009 | Longido | Tanzania | JX262383 | X | [21] |
WH | TAN/13/Moshi | 2013 | Moshi | Tanzania | KF706360 | X | [22] |
DP | TAN/13/Rombo | 2013 | Rombo | Tanzania | KF706361 | X | [22] |
DP | TAN/13/Machame | 2013 | Machame | Tanzania | KF706362 | X | [22] |
DP | TAN/13/Arusha | 2013 | Arusha | Tanzania | KF706363 | X | [22] |
DP | TAN/08/Mazimbu | 2008 | Mazimbu | Tanzania | GQ410765 | XV | [17] |
DP | Tan/1/01 | 2001 | Dar es Salaam | Tanzania | AY494552 | XV | [24] |
DP | Tan/2003/01 | 2003 | Arusha | Tanzania | AY494550 | XVI | [24] |
DP | Lisbon/60 | 1960 | Lisbon | Portugal | AF301539 | I | [11] |
WH | BOT/1/99 | 1999 | Sherwood | Botswana | AF504886 | III | [11] |
WH | RSA/1/99/W | 1999 | Thabazimbi | South Africa | AF449477 | IV | [11] |
DP | MAL/2002/1 | 2002 | Mpemba | Malawi | AY494553 | V | [24] |
DP | MOZ/94/8 | 1994 | Manica | Mozambique | AF270712 | VI | [28] |
DP | RSA/1/98 | 1998 | Potgietersrus | South Africa | AF302818 | VII | [28] |
DP | Malawi/1978 | 1978 | NK | Malawi | AF270707 | VIII | [28] |
DP | MOZ-A/98 | 1998 | Tete | Mozambique | AY274452 | VIII | [28] |
Tk | KAB/62 | 1983 | Livingstone | Zambia | AY351522 | XI | [24] |
Tk | MFUE6/1 | 1982 | Mfue | Zambia | AY351561 | XII | [24] |
Tk | SUM/1411 | 1983 | Sumbu Park | Zambia | AY351542 | XIII | [24] |
Tk | NYA/12 | 1986 | Kalumo | Zambia | AY351555 | XIV | [24] |
DP | TAN/1/01 | 2001 | Dar es Salaam | Tanzania | AY494552 | XV | [24] |
DP | TAN/2003/1 | 2003 | Arusha | Tanzania | AY494550 | XVI | [24] |
DP | ZIM/92/1a | 1992 | Gweru Midlands | Zimbabwe | DQ250119 | XVII | [8] |
DP | NAM/1/95 | 1995 | Windhoek | Namibia | DQ250122 | XVIII | [8] |
DP | SPEC/125 | 1987 | Ellisras | South Africa | DQ250112 | XIX | [8] |
DP | RSA/1/95 | 1995 | Hoiedspruit | South Africa | DQ250123 | XX | [8] |
DP | SPEC/53 | 1985 | Letaba | South Africa | DQ250111 | XXI | [8] |
DP | SPEC/245 | 1992 | Louis Trichardt | South Africa | DQ250117 | XXII | [8] |
DP | ET13/1504 | 2013 | Debre Zeit | Ethiopia | KU291454 | XXIII | [9] |
SF | MOZ_16/2006 | 2006 | Gorongosa National Park | Mozambique | KY353995 | XXIV | [10] |