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Table 2 List of significant SNPs associated with sire EBVs for milk ELISA, based on the single-SNP regression method

From: Association of genetic polymorphisms related to Johne’s disease with estimated breeding values of Holstein sires for milk ELISA test scores

SNP rsID

SNP name

BTA

Position (bp)

MAF

P-value

FDR

b

rs110494981

ARS-BFGL-NGS-8531

9

44,713,803

0.24

9.0E-05

5%

0.00870

rs136182707

BovineHD1600014724

16

53,247,138

0.43

0.00088

5%

0.00680

rs41810662

BovineHD1600015492

16

55,677,310

0.30

0.00062

5%

0.00719

rs41617133

Hapmap51130-BTA-105627

23

32,876,929

0.20

0.00050

5%

0.00368

  1. MAF Minor Allele Frequency; BTA Bos taurus autosome; FDR False Discovery Rate; b – variance explained by SNP relative to the Standard Deviation of EBVs after correcting for selective genotyping