From: Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility
SNP effect | All dataset | Joined with (i) | Joined with (iii) | Common (i) and (iii) |
---|---|---|---|---|
3’UTR | 16,507 | 1665 | 72 | 4 |
5’UTR | 2741 | 382 | 16 | 8 |
Frameshift | 20 | 2 | 0 | 0 |
Missense | 3452 | 477 | 27 | 7 |
Start lost | 8 | 0 | 0 | 0 |
Stop lost | 8 | 2 | 0 | 0 |
Stop gained | 19 | 1 | 0 | 0 |
Splice region variant | 722 | 90 | 3 | 1 |
Splice acceptor | 19 | 5 | 0 | 0 |
Splice donor | 30 | 6 | 0 | 0 |
Coding sequence variant | 4 | 0 | 0 | 0 |
Inframe deletion | 47 | 1 | 0 | 0 |
Inframe insertion | 20 | 3 | 0 | 0 |
Protein altering variant | 1 | 0 | 0 | 0 |
Synonymous | 77,186 | 704 | 29 | 8 |
SNP impact | ||||
 High | 104 | 16 | 0 | 0 |
 Moderate | 3518 | 481 | 27 | 7 |
 Low | 8343 | 761 | 32 | 9 |
 Modifier | 243,587 | 22,707 | 723 | 323 |