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Table 5 Effects of putative SNPs

From: Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

SNP effect All dataset Joined with (i) Joined with (iii) Common (i) and (iii)
3’UTR 16,507 1665 72 4
5’UTR 2741 382 16 8
Frameshift 20 2 0 0
Missense 3452 477 27 7
Start lost 8 0 0 0
Stop lost 8 2 0 0
Stop gained 19 1 0 0
Splice region variant 722 90 3 1
Splice acceptor 19 5 0 0
Splice donor 30 6 0 0
Coding sequence variant 4 0 0 0
Inframe deletion 47 1 0 0
Inframe insertion 20 3 0 0
Protein altering variant 1 0 0 0
Synonymous 77,186 704 29 8
SNP impact
 High 104 16 0 0
 Moderate 3518 481 27 7
 Low 8343 761 32 9
 Modifier 243,587 22,707 723 323
  1. SNP effect according to Ensembl VEP for putative variants detected using the animals of contrasts (i) and (iii). The results are shown for all filtered variants in the Landrace dataset and variants in differentially expressed genes. Some variants have more than one predicted effect
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