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Table 2 Differentially expressed genes in common for contrasts (i) high versus low hyperactivity at day 0 in Landrace and (iii) high versus low change in levels of hyperactivity between day 0 and 96 h storage in Landrace

From: Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

Gene ID

Gene symbol

Gene name

FDR (i)

FDR (iii)

Count high (i)

Count low (i)

Count high (iii)

Count low (iii)

ENSSSCG00000034732

DNLZ

DNL-type zinc finger

4.5e-08

1.3e-03

182 (± 22)

1093 (± 95)

67 (± 22)

179 (± 40)

ENSSSCG00000035243

RAB27B

RAB27B, member RAS oncogene family

2.1e-02

7.7e-03

1650 (± 1105)

710 (± 259)

1706 (± 801)

519 (± 226)

ENSSSCG00000012405

RPS4X

ribosomal protein S4, X-linked

3.0e-02

1.0e-02

31,095 (± 13,846)

18,108 (± 5267)

34,635 (± 13,478)

14,745 (± 5991)

ENSSSCG00000008857

MSMO1

methylsterol monooxygenase 1

2.3e-02

1.0e-02

11,766 (± 7534)

5367 (± 1735)

11,744 (± 2348)

4422 (± 2427)

ENSSSCG00000030005

LGALSL

galectin like

2.9e-02

1.5e-02

3051 (± 1446)

1646 (± 488)

3916 (± 1783)

1433 (± 505)

ENSSSCG00000014139

ARSK

arylsulfatase family member

1.1e-02

1.5e-02

913 (± 303)

466 (± 108)

992 (± 131)

364 (± 110)

ENSSSCG00000034499

TMEM225B

transmembrane protein 225B

1.7e-03

1.5e-02

895 (± 330)

2094 (± 786)

933 (± 187)

1479 (± 577)

ENSSSCG00000003575

CD164L2

CD164 molecule like 2

7.3e-03

1.5e-02

109 (± 73)

361 (± 182)

103 (± 18)

241 (± 63)

ENSSSCG00000014156

ARRDC3

arrestin domain containing

1.7e-03

2.2e-02

3734 (± 1606)

1730 (± 426)

4836 (± 2569)

1659 (± 352)

ENSSSCG00000000602

RERG

RAS like estrogen regulated growth inhibitor

8.2e-04

2.2e-02

848 (± 607)

241 (± 65)

854 (± 625)

198 (± 97)

ENSSSCG00000032235

ARFGAP1

ADP ribosylation factor GTPase activating protein

1.2e-05

2.3e-02

322 (± 96)

1043 (± 387)

339 (± 84)

686 (± 240)

ENSSSCG00000016027

ITGAV

integrin alpha-V precursor

4.9e-02

2.4e-02

7399 (± 3982)

4034 (± 1544)

8956 (± 4183)

3467 (± 1892)

ENSSSCG00000031571

novel gene

novel gene

4.3e-05

2.4e-02

553 (± 68)

1395 (± 316)

343 (± 181)

726 (± 375)

ENSSSCG00000027178

MAN2B2

mannosidase alpha class 2B

5.1e-05

2.5e-02

161 (± 49)

489 (± 150)

166 (± 78)

304 (± 94)

ENSSSCG00000005671

CRAT

carnitine O-acetyltransferase

2.6e-04

2.7e-02

3346 (± 1334)

7076 (± 1745)

3539 (± 1249)

4976 (± 849)

ENSSSCG00000027472

GCA

grancalcin

9.9e-03

2.8e-02

3324 (± 1663)

1575 (± 516)

3584 (± 1860)

1268 (± 665)

ENSSSCG00000010084

novel gene

novel gene

0.0002

2.8e-02

1785 (± 534)

3575 (± 743)

1628 (± 671)

2559 (± 935)

ENSSSCG00000028425

UBL4B

ubiquitin like 4B

1.4e-05

2.8e-02

1450 (± 700)

4446 (± 1009)

1469 (± 746)

2832 (± 1106)

ENSSSCG00000008118

PROM2

prominin 2

2.0e-02

2.8e-02

76 (± 54)

210 (± 77)

74 (± 21)

200 (± 82)

ENSSSCG00000033277

IQCF5

IQ motif containing F5

8.1e-03

2.9e-02

18,391 (± 3501)

26,423 (± 2197)

16,727 (± 4257)

20,458 (± 4997)

ENSSSCG00000007700

HIP1

huntingtin interacting protein 1

8.7e-04

3.7e-02

3592 (± 993)

5921 (± 1011)

2947 (± 1720)

4441 (± 1402)

ENSSSCG00000035218

ADA2

adenosine deaminase CECR1 precursor

4.2e-02

3.8e-02

182 (± 47)

303 (± 68)

137 (± 36)

243 (± 27)

ENSSSCG00000013335

LGR4

leucine rich repeat containing G protein-coupled

3.8e-02

4.0e-02

3815 (± 1202)

2412 (± 767)

5078 (± 2454)

2098 (± 623)

ENSSSCG00000007019

GPAT4

glycerol-3-phosphate acyltransferase 4

1.5e-04

4.0e-02

6146 (± 1491)

10,211 (± 2337)

5818 (± 2115)

7630 (± 2240)

ENSSSCG00000016592

FSCN3

fascin-3

5.9e-04

4.0e-02

7738 (± 2188)

13,775 (± 2808)

6367 (± 3262)

10,079 (± 3560)

ENSSSCG00000016278

TEX44

testis expressed 44

2.1e-04

4.4e-02

4149 (± 2414)

11,049 (± 2567)

4330 (± 2331)

7558 (± 3339)

ENSSSCG00000006928

LMO4

LIM domain only 4

3.3e-02

4.8e-02

831 (± 261)

465 (± 121)

989 (± 385)

368 (± 156)

ENSSSCG00000032715

CERS6

ceramide synthase 6

3.6e-02

4.8e-02

4029 (± 1640)

2452 (± 690)

6135 (± 3651)

2277 (± 572)

ENSSSCG00000033734

TMSB4Y

thymosin beta 4, Y-linked

1.8e-02

4.8e-02

3676 (± 1035)

2191 (± 602)

5172 (± 3085)

1951 (± 352)

ENSSSCG00000028613

CETN1

centrin 1

3.1e-04

4.8e-02

31,883 (± 6281)

54,982 (± 9504)

30,604 (± 7660)

38,067 (± 8989)

ENSSSCG00000003949

CDC20

Cell division cycle protein 20 homolog

6.8e-04

4.8e-02

3008 (± 1098)

5940 (± 1740)

3005 (± 1079)

4302 (± 1296)

ENSSSCG00000021337

PRM1

protamine 1

8.2e-03

4.8e-02

82,199 (± 27,212)

117,697 (± 11,624)

67,279 (± 46,538)

100,121 (± 16,807)

ENSSSCG00000029145

POMGNT1

protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

1.5e-02

4.8e-02

2003 (± 748)

3583 (± 732)

1930 (± 356)

3052 (± 895)

ENSSSCG00000039792

CDRT4

CMT1A duplicated region transcript 4

1.7e-03

4.8e-02

466 (± 116)

923 (± 210)

428 (± 121)

719 (± 219)

ENSSSCG00000035607

PRM3

protamine 3

8.9e-05

4.8e-02

2567 (± 1570)

6555 (± 1223)

2693 (± 1803)

4481 (± 1585)

ENSSSCG00000003486

ARHGEF10L

Rho guanine nucleotide exchange factor 10 like

1.1e-03

4.8e-02

134 (± 53)

356 (± 180)

140 (± 58)

279 (± 91)

ENSSSCG00000013519

ZNRF4

zinc and ring finger 4

2.4e-05

4.8e-02

1019 (± 587)

3079 (± 966)

1112 (± 647)

2049 (± 805)

ENSSSCG00000014187

NUDT12

nudix hydrolase 12

2.6e-02

4.9e-02

792 (± 307)

419 (± 131)

928 (± 418)

340 (± 136)

ENSSSCG00000002839

C16orf78

chromosome 16 open reading frame 78

1.8e-03

4.9e-02

3755 (± 1189)

6066 (± 1030)

3256 (± 1979)

4673 (± 1694)

ENSSSCG00000021448

CCDC17

coiled-coil domain containing 17

5.9e-06

4.9e-02

1719 (± 517)

3650 (± 792)

1689 (± 730)

2647 (± 1024)

ENSSSCG00000021255

ADA

adenosine deaminase

1.7e-02

4.9e-02

82 (± 23)

162 (± 37)

63 (± 34)

152 (± 65)

  1. Genes differentially expressed in contrasts (i) and (iii) are presented with gene Ensembl ID, gene symbol, gene name and significance level (FDR) in Landrace (L) for the two contrasts. Moreover, average read counts for the high and low groups are included along with standard deviations