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Table 2 Differentially expressed genes in common for contrasts (i) high versus low hyperactivity at day 0 in Landrace and (iii) high versus low change in levels of hyperactivity between day 0 and 96 h storage in Landrace

From: Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

Gene ID Gene symbol Gene name FDR (i) FDR (iii) Count high (i) Count low (i) Count high (iii) Count low (iii)
ENSSSCG00000034732 DNLZ DNL-type zinc finger 4.5e-08 1.3e-03 182 (± 22) 1093 (± 95) 67 (± 22) 179 (± 40)
ENSSSCG00000035243 RAB27B RAB27B, member RAS oncogene family 2.1e-02 7.7e-03 1650 (± 1105) 710 (± 259) 1706 (± 801) 519 (± 226)
ENSSSCG00000012405 RPS4X ribosomal protein S4, X-linked 3.0e-02 1.0e-02 31,095 (± 13,846) 18,108 (± 5267) 34,635 (± 13,478) 14,745 (± 5991)
ENSSSCG00000008857 MSMO1 methylsterol monooxygenase 1 2.3e-02 1.0e-02 11,766 (± 7534) 5367 (± 1735) 11,744 (± 2348) 4422 (± 2427)
ENSSSCG00000030005 LGALSL galectin like 2.9e-02 1.5e-02 3051 (± 1446) 1646 (± 488) 3916 (± 1783) 1433 (± 505)
ENSSSCG00000014139 ARSK arylsulfatase family member 1.1e-02 1.5e-02 913 (± 303) 466 (± 108) 992 (± 131) 364 (± 110)
ENSSSCG00000034499 TMEM225B transmembrane protein 225B 1.7e-03 1.5e-02 895 (± 330) 2094 (± 786) 933 (± 187) 1479 (± 577)
ENSSSCG00000003575 CD164L2 CD164 molecule like 2 7.3e-03 1.5e-02 109 (± 73) 361 (± 182) 103 (± 18) 241 (± 63)
ENSSSCG00000014156 ARRDC3 arrestin domain containing 1.7e-03 2.2e-02 3734 (± 1606) 1730 (± 426) 4836 (± 2569) 1659 (± 352)
ENSSSCG00000000602 RERG RAS like estrogen regulated growth inhibitor 8.2e-04 2.2e-02 848 (± 607) 241 (± 65) 854 (± 625) 198 (± 97)
ENSSSCG00000032235 ARFGAP1 ADP ribosylation factor GTPase activating protein 1.2e-05 2.3e-02 322 (± 96) 1043 (± 387) 339 (± 84) 686 (± 240)
ENSSSCG00000016027 ITGAV integrin alpha-V precursor 4.9e-02 2.4e-02 7399 (± 3982) 4034 (± 1544) 8956 (± 4183) 3467 (± 1892)
ENSSSCG00000031571 novel gene novel gene 4.3e-05 2.4e-02 553 (± 68) 1395 (± 316) 343 (± 181) 726 (± 375)
ENSSSCG00000027178 MAN2B2 mannosidase alpha class 2B 5.1e-05 2.5e-02 161 (± 49) 489 (± 150) 166 (± 78) 304 (± 94)
ENSSSCG00000005671 CRAT carnitine O-acetyltransferase 2.6e-04 2.7e-02 3346 (± 1334) 7076 (± 1745) 3539 (± 1249) 4976 (± 849)
ENSSSCG00000027472 GCA grancalcin 9.9e-03 2.8e-02 3324 (± 1663) 1575 (± 516) 3584 (± 1860) 1268 (± 665)
ENSSSCG00000010084 novel gene novel gene 0.0002 2.8e-02 1785 (± 534) 3575 (± 743) 1628 (± 671) 2559 (± 935)
ENSSSCG00000028425 UBL4B ubiquitin like 4B 1.4e-05 2.8e-02 1450 (± 700) 4446 (± 1009) 1469 (± 746) 2832 (± 1106)
ENSSSCG00000008118 PROM2 prominin 2 2.0e-02 2.8e-02 76 (± 54) 210 (± 77) 74 (± 21) 200 (± 82)
ENSSSCG00000033277 IQCF5 IQ motif containing F5 8.1e-03 2.9e-02 18,391 (± 3501) 26,423 (± 2197) 16,727 (± 4257) 20,458 (± 4997)
ENSSSCG00000007700 HIP1 huntingtin interacting protein 1 8.7e-04 3.7e-02 3592 (± 993) 5921 (± 1011) 2947 (± 1720) 4441 (± 1402)
ENSSSCG00000035218 ADA2 adenosine deaminase CECR1 precursor 4.2e-02 3.8e-02 182 (± 47) 303 (± 68) 137 (± 36) 243 (± 27)
ENSSSCG00000013335 LGR4 leucine rich repeat containing G protein-coupled 3.8e-02 4.0e-02 3815 (± 1202) 2412 (± 767) 5078 (± 2454) 2098 (± 623)
ENSSSCG00000007019 GPAT4 glycerol-3-phosphate acyltransferase 4 1.5e-04 4.0e-02 6146 (± 1491) 10,211 (± 2337) 5818 (± 2115) 7630 (± 2240)
ENSSSCG00000016592 FSCN3 fascin-3 5.9e-04 4.0e-02 7738 (± 2188) 13,775 (± 2808) 6367 (± 3262) 10,079 (± 3560)
ENSSSCG00000016278 TEX44 testis expressed 44 2.1e-04 4.4e-02 4149 (± 2414) 11,049 (± 2567) 4330 (± 2331) 7558 (± 3339)
ENSSSCG00000006928 LMO4 LIM domain only 4 3.3e-02 4.8e-02 831 (± 261) 465 (± 121) 989 (± 385) 368 (± 156)
ENSSSCG00000032715 CERS6 ceramide synthase 6 3.6e-02 4.8e-02 4029 (± 1640) 2452 (± 690) 6135 (± 3651) 2277 (± 572)
ENSSSCG00000033734 TMSB4Y thymosin beta 4, Y-linked 1.8e-02 4.8e-02 3676 (± 1035) 2191 (± 602) 5172 (± 3085) 1951 (± 352)
ENSSSCG00000028613 CETN1 centrin 1 3.1e-04 4.8e-02 31,883 (± 6281) 54,982 (± 9504) 30,604 (± 7660) 38,067 (± 8989)
ENSSSCG00000003949 CDC20 Cell division cycle protein 20 homolog 6.8e-04 4.8e-02 3008 (± 1098) 5940 (± 1740) 3005 (± 1079) 4302 (± 1296)
ENSSSCG00000021337 PRM1 protamine 1 8.2e-03 4.8e-02 82,199 (± 27,212) 117,697 (± 11,624) 67,279 (± 46,538) 100,121 (± 16,807)
ENSSSCG00000029145 POMGNT1 protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 1.5e-02 4.8e-02 2003 (± 748) 3583 (± 732) 1930 (± 356) 3052 (± 895)
ENSSSCG00000039792 CDRT4 CMT1A duplicated region transcript 4 1.7e-03 4.8e-02 466 (± 116) 923 (± 210) 428 (± 121) 719 (± 219)
ENSSSCG00000035607 PRM3 protamine 3 8.9e-05 4.8e-02 2567 (± 1570) 6555 (± 1223) 2693 (± 1803) 4481 (± 1585)
ENSSSCG00000003486 ARHGEF10L Rho guanine nucleotide exchange factor 10 like 1.1e-03 4.8e-02 134 (± 53) 356 (± 180) 140 (± 58) 279 (± 91)
ENSSSCG00000013519 ZNRF4 zinc and ring finger 4 2.4e-05 4.8e-02 1019 (± 587) 3079 (± 966) 1112 (± 647) 2049 (± 805)
ENSSSCG00000014187 NUDT12 nudix hydrolase 12 2.6e-02 4.9e-02 792 (± 307) 419 (± 131) 928 (± 418) 340 (± 136)
ENSSSCG00000002839 C16orf78 chromosome 16 open reading frame 78 1.8e-03 4.9e-02 3755 (± 1189) 6066 (± 1030) 3256 (± 1979) 4673 (± 1694)
ENSSSCG00000021448 CCDC17 coiled-coil domain containing 17 5.9e-06 4.9e-02 1719 (± 517) 3650 (± 792) 1689 (± 730) 2647 (± 1024)
ENSSSCG00000021255 ADA adenosine deaminase 1.7e-02 4.9e-02 82 (± 23) 162 (± 37) 63 (± 34) 152 (± 65)
  1. Genes differentially expressed in contrasts (i) and (iii) are presented with gene Ensembl ID, gene symbol, gene name and significance level (FDR) in Landrace (L) for the two contrasts. Moreover, average read counts for the high and low groups are included along with standard deviations