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Table 3 Top 15 SNVs ranked by significance for the GWAS analysis of isolation of Salmonella from tissues at slaughter

From: Identification of single-nucleotide variants associated with susceptibility to Salmonella in pigs using a genome-wide association approach

SNV ID SSCa Location (bp)b Variant type Genec Gene locationb p-valued
rs322440805 3 130,637,256 intergenic DCDC2C 3: 131097730–131,194,726 1.6 × 10−6
rs326411709 3 130,676,894 intergenic DCDC2C 3: 131097730–131,194,726 3.7 × 10− 6
rs319944764 3 130,689,632 intergenic DCDC2C 3: 131097730–131,194,726 8.6 × 10−6
rs81348815 1 15,081,855 intergenic AKAP12 1: 14906823–15,016,841 2.0 × 10−5
rs80951933 1 15,109,785 intergenic AKAP12 1: 14906823–15,016,841 3.1 × 10−5
rs80903645 1 15,064,589 intergenic AKAP12 1: 14906823–15,016,841 3.6 × 10−5
rs326617356 18 26,691,633 intergenic KCND2 18: 26554190–26,623,034 1.3 × 10− 4
rs323563819 19 109,560,455 intron GPC3 X: 109536447–110,060,245 2.0 × 10−4
rs80820138 14 122,383,711 intergenic GPAM 14: 122542205–122,577,239 2.0 × 10−4
rs80961723 7 120,400,325 intergenic SETD3 7: 120412549–120,486,627 2.2 × 10−4
rs320610499 6 141,349,179 intron NEGR1 6: 141115729–141,647,820 2.5 × 10−4
rs81296290 2 91,504,717 intron VCAN 2: 91287931–91,811,674 2.8 × 10−4
rs324243793 18 38,747,572 intron DPY19L2 18: 38693003–38,764,024 3.3 × 10−4
rs80840697 1 14,988,130 intron AKAP12 1: 14906823–15,016,841 4.1 × 10−4
rs81361262 2 90,665,766 downstream ATG10 2: 90437020–90,665,380 4.5 × 10−4
  1. aSSC = Sus scrofa chromosome
  2. bLocation in Ensembl Sscrofa11.1
  3. cIf the variant was intergenic, the closest gene within a 1 Mbp window was indicated
  4. dSNVs under the suggestive significance threshold of 1.0 × 10−5 in bold [39]
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