Table 2 The amino acid identities of genome ORFs of two Slovenian roe deer AstV strains compared to AstV strains from GenBank
From: A molecular survey, whole genome sequencing and phylogenetic analysis of astroviruses from roe deer
AstV_SLO/D5–14 | AstV_ SLO/D12–14 | |||||
|---|---|---|---|---|---|---|
ORF1a [%] | ORF1b [%] | ORF2 [%] | ORF1a [%] | ORF1b [%] | ORF2 [%] | |
MN150124_Roe_deer_CcAstV/roe_deer/SLO/D5–14/2014 | 86.5 | 95.8 | 77.5 | |||
MN150125_Roe_deer_CcAstV/roe_deer/SLO/D12–14/2014 | 86.5 | 95.8 | 77.5 | |||
HM447045.1_Deer/CcAstV-1/DNK/2010 | NA | NA | 86.3 | NA | NA | 74.9 |
HM447046.1_Deer/CcAstV-2/DNK/2010 | NA | NA | 77.5 | NA | NA | 96.1 |
KJ476833.1_Bovine_astrovirus_strain_BAstGX-G1 | NA | NA | 86.7 | NA | NA | 76.4 |
KJ476838.1_Water_buffalo_astrovirus_strain_BufAstGX-M552 | NA | NA | 76.9 | NA | NA | 75.6 |
KJ476837.1_Water_buffalo_astrovirus_strain_BufAstGX-M541 | NA | NA | 76.7 | NA | NA | 75.4 |
HQ916313.1_Bovine_astrovirus_B18/HK | 84.7 | 95.0 | 75.8 | 92.1 | 95.4 | 75.6 |
LC047796.1_Bovine_BoAstV/JPN/Kagoshima1–7/2014 | 91.3 | 94.6 | 75.4 | 84.7 | 95.2 | 74.9 |
HQ916317.1_Bovine_astrovirus_B76–2/HK | 84.1 | 96.0 | 78.2 | 90.5 | 96.4 | 76.9 |
MG660832.1_Sichuan_takin_astrovirus | 83.9 | 93.5 | 85.2 | 90.2 | 93.3 | 76.4 |
KJ476835.1_Bovine_astrovirus_strain_BAstGX-J22 | NA | NA | 84.4 | NA | NA | 75.8 |
KJ476832.1_Bovine_astrovirus_strain_BAstGX-J27 | NA | NA | 84.6 | NA | NA | 75.8 |
KJ476836.1_Bovine_astrovirus_strain_BAstGX-J8 | NA | NA | 84.4 | NA | NA | 75.8 |
KJ476834.1_Bovine_astrovirus_strain_BAstGX-J7 | NA | NA | 84.8 | NA | NA | 76.0 |
KJ620980.1_Bovine_BAstV-GX27/CHN/2014 | 83.4 | 95.8 | 84.6 | 88.9 | 96.0 | 75.8 |
KJ620979.1_Bovine_BAstV-GX7/CHN/2014 | 82.8 | 95.4 | 84.8 | 88.9 | 95.6 | 76.0 |
KJ571486.1_Porcupine_astrovirus_Hb/LP084/Guangxi | NA | 83.5 | 76.7 | NA | 83.1 | 72.6 |
KJ495987.1_Porcine_astrovirus_2_clone_KDC-6 | NA | NA | 73.0 | NA | NA | 72.4 |
LC201590.1_Porcine_PoAstV2/JPN/Ishi-Ya6/2015 | 73.8 | 82.6 | 72.8 | 74.0 | 81.6 | 73.4 |
JF713712.1_Porcine_astrovirus_2_strain_51/USA | 73.3 | 84.1 | 71.7 | 73.3 | 83.7 | 69.4 |
KR868721.1_Dromedary_astrovirus_isolate_DcAstV-169 | 73.8 | 83.9 | 71.1 | 74.1 | 82.6 | 67.0 |
KR868722.1_Dromedary_astrovirus_isolate_DcAstV-64 | 74.3 | 83.7 | 71.3 | 74.8 | 82.4 | 67.0 |
KR868723.1_Dromedary_astrovirus_isolate_DcAstV-135 | 73.5 | 84.1 | 72.4 | 74.4 | 82.2 | 69.0 |
KY940076.1_Porcine_Mamastrovirus_2_isolate_K321 | 73.2 | 82.6 | 68.5 | 72.8 | 81.4 | 65.3 |
KY940077.1_Porcine_Mamastrovirus_2_isolate_U083 | 72.3 | 82.4 | 66.0 | 71.5 | 81.4 | 65.7 |
JF713710.1_Porcine_astrovirus_2_strain_43/USA | 73.3 | 84.1 | 69.0 | 73.3 | 83.1 | 69.4 |
LC201585.1_Porcine_PoAstV2/JPN/Bu5–10-1/2014 | 72.2 | 84.3 | 69.8 | 73.0 | 83.7 | 70.0 |
JX556690.1_Porcine_AstV2-US-IA122 | 72.0 | 84.5 | 69.4 | 73.3 | 84.3 | 69.4 |
KM822593.1_Yak_astrovirus_isolate_S8 | 83.3 | 95.0 | 71.3 | 92.3 | 95.8 | 69.8 |
LC047788.1_Bovine_BoAstV/JPN/Ishikawa9728/2013 | 76.2 | 87.2 | 53.5 | 76.4 | 87.0 | 54.6 |
LC047789.1_Bovine_BoAstV/JPN/Hokkaido11–7/2009 | 75.9 | 88.3 | 53.5 | 75.7 | 87.9 | 55.7 |
LC047792.1_Bovine_BoAstV/JPN/Hokkaido12–18/2009 | 75.2 | 87.7 | 55.5 | 75.7 | 87.4 | 55.9 |
LC047795.1_Bovine_BoAstV/JPN/Kagoshima1–2/2014 | 76.0 | 87.7 | 54.2 | 76.0 | 87.0 | 54.8 |
LC047801.1_Bovine_BoAstV/JPN/Kagoshima2–52/2015 | 76.0 | 87.0 | 53.7 | 75.7 | 87.2 | 55.0 |
HQ916314.1_Bovine_astrovirus_B170/HK | 75.7 | 86.4 | 60.4 | 75.6 | 86.4 | 60.4 |
KP982872.1_Porcine_astrovirus_2_isolate_Bel-12R021 | 72.2 | 82.6 | 57.6 | 74.1 | 81.8 | 57.0 |
LC201592.1_Porcine_PoAstV2/JPN/Ishi-Ya8/2015 | 74.0 | 83.1 | 54.8 | 73.2 | 81.8 | 56.5 |
LC201593.1_Porcine_PoAstV2/JPN/Ishi-Im3/2015 | 70.4 | 83.3 | 59.3 | 72.0 | 81.4 | 57.8 |
LC047787.1_Bovine_BoAstV/JPN/Ishikawa24–6/2013 | 83.8 | 95.4 | 47.1 | 90.5 | 95.8 | 45.0 |
LC047797.1_Bovine_BoAstV/JPN/Kagoshima2–3-1/2015 | 83.9 | 95.0 | 47.1 | 89.4 | 96.0 | 46.5 |
JQ340310.1_Wild_boar/WBAstV-1/2011/HUN | 37.1 | 56.7 | 40.7 | 36.7 | 57.5 | 41.5 |
NC_026814.1_Canine_astrovirus_strain_Gillingham/2012/UK | 28.8 | 59.0 | 35.8 | 29.6 | 59.2 | 36.0 |
NC_001943.1_Human_astrovirus | 29.4 | 60.3 | 36.8 | 31.4 | 60.3 | 35.5 |
NC_022249.1_Feline_astrovirus_2_strain_1637F | 28.5 | 58.2 | 36.2 | 29.9 | 59.0 | 34.0 |
NC_034975.1_California_sea_lion_astrovirus_2 | NA | NA | 30.8 | NA | NA | 30.8 |
NC_002469.1_Ovine_astrovirus | 30.4 | 52.1 | 30.8 | 29.9 | 53.8 | 30.8 |
NC_013443.1_HMO_Astrovirus_A | 29.3 | 50.6 | 28.5 | 30.2 | 50.8 | 29.1 |
NC_004579.1_Mink_astrovirus | 28.6 | 54.8 | 27.4 | 28.8 | 55.2 | 27.8 |
NC_002470.1_Turkey_astrovirus | 22.5 | 42.1 | 23.3 | 23.6 | 42.5 | 24.4 |