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Table 1 RVA segment genotypes and closest homologues in GenBank

From: Full genomic characterization of a porcine rotavirus strain detected in an asymptomatic piglet in Accra, Ghana

ProteinGenomic Segment
(bpa)
Genome CoveragebGenotypeClosest match in GenBank
% nucleotide identity, name
ReferencePercentage identity cut-off values between genotypes [3]
VP79 (1062)1–1062G596%, RVA/Human-wt/CHN/LL4260/2000/G5P[6][9]80
96%, RVA/Human-wt/CHN/LL3354/2000/G5P[6][9]
VP44 (2359)1–2355P[7]89%, RVA/Pig-tc/AUS/TFR-41/1986/G5P[9][12]80
89%, RVA/Pig-tc/KOR/174–1/2006/G8P[7][13]
VP66 (1356)1–1350I598%, RVA/Pig-wt/CHN/DZ-1/2013/G5P[X]ds85
96%, RVA/Pig-wt/CHN/WF-5-1/2014/G5P[X]ds
VP11 (3302)1–3292R194%, RVA/Human-wt/TWN/07-96 s1118/2007/G9P[19][10]83
93%, RVA/Pig-wt/TWN/2–3/2015/G9P[13][10]
VP22 (2717)1–2717C194%, RVA/Pig-wt/CHN/JL01/2017/GXP[17]ds84
88%, RVA/Human-wt/HUN/BP271/2000/G4P[6][11]
VP33 (2591)22–2574M195%, RVA/Giant_Panda-tc/CHN/CH-1/2008/G1P[7][14]81
94%, RVA/Human-wt/CHN/LL3354/2000/G5P[6][9]
NSP15 (1567)13–1522A898%, RVA/Human-tc/VNM/NT0042/2007/G4P[6][15]79
95%, RVA/Pig-wt/VNM/14226_39/2012/G4P[6][16]
NSP28 (1059)18–1046N196%, RVA/Pig-wt/TWN/3–17/2015/G9P[23][10]85
96%, RVA/Human-wt/TWN/07-96 s1118/2007/G9P[19][10]
NSP37 (1076)17–1076T795%, RVA/Human-wt/BEL/BE2001/2009/G9P[6][17]85
94%, RVA/Human-wt/COD/KisB332/2008/G4P[6][18]
NSP410 (750)16–741E198%, RVA/Pig-wt/CHN/LLP48/2008/G9P[6]ds85
98%, RVA/Pig-wt/CHN/HLJ/15/1/2015/G4P[23]ds
NSP511 (663)12–639H198%, RVA/Pig-wt/USA/OK.5.68/2008 cds91
98%, RVA/Pig-wt/CHN/NMTL/2008/G9P[23][19]
  1. ds direct submission
  2. aReference sequence length
  3. bSequences were aligned against the reference genotypes to determine segment coverage
  4. cStrain OK.5.68 is OK.5.68a G5P[6] or OK.5.68b G9P[7] but the NSP5 is unassigned to a or b