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Table 1 RVA segment genotypes and closest homologues in GenBank

From: Full genomic characterization of a porcine rotavirus strain detected in an asymptomatic piglet in Accra, Ghana

Protein

Genomic Segment

(bpa)

Genome Coverageb

Genotype

Closest match in GenBank

% nucleotide identity, name

Reference

Percentage identity cut-off values between genotypes [3]

VP7

9 (1062)

1–1062

G5

96%, RVA/Human-wt/CHN/LL4260/2000/G5P[6]

[9]

80

96%, RVA/Human-wt/CHN/LL3354/2000/G5P[6]

[9]

VP4

4 (2359)

1–2355

P[7]

89%, RVA/Pig-tc/AUS/TFR-41/1986/G5P[9]

[12]

80

89%, RVA/Pig-tc/KOR/174–1/2006/G8P[7]

[13]

VP6

6 (1356)

1–1350

I5

98%, RVA/Pig-wt/CHN/DZ-1/2013/G5P[X]

ds

85

96%, RVA/Pig-wt/CHN/WF-5-1/2014/G5P[X]

ds

VP1

1 (3302)

1–3292

R1

94%, RVA/Human-wt/TWN/07-96 s1118/2007/G9P[19]

[10]

83

93%, RVA/Pig-wt/TWN/2–3/2015/G9P[13]

[10]

VP2

2 (2717)

1–2717

C1

94%, RVA/Pig-wt/CHN/JL01/2017/GXP[17]

ds

84

88%, RVA/Human-wt/HUN/BP271/2000/G4P[6]

[11]

VP3

3 (2591)

22–2574

M1

95%, RVA/Giant_Panda-tc/CHN/CH-1/2008/G1P[7]

[14]

81

94%, RVA/Human-wt/CHN/LL3354/2000/G5P[6]

[9]

NSP1

5 (1567)

13–1522

A8

98%, RVA/Human-tc/VNM/NT0042/2007/G4P[6]

[15]

79

95%, RVA/Pig-wt/VNM/14226_39/2012/G4P[6]

[16]

NSP2

8 (1059)

18–1046

N1

96%, RVA/Pig-wt/TWN/3–17/2015/G9P[23]

[10]

85

96%, RVA/Human-wt/TWN/07-96 s1118/2007/G9P[19]

[10]

NSP3

7 (1076)

17–1076

T7

95%, RVA/Human-wt/BEL/BE2001/2009/G9P[6]

[17]

85

94%, RVA/Human-wt/COD/KisB332/2008/G4P[6]

[18]

NSP4

10 (750)

16–741

E1

98%, RVA/Pig-wt/CHN/LLP48/2008/G9P[6]

ds

85

98%, RVA/Pig-wt/CHN/HLJ/15/1/2015/G4P[23]

ds

NSP5

11 (663)

12–639

H1

98%, RVA/Pig-wt/USA/OK.5.68/2008 c

ds

91

98%, RVA/Pig-wt/CHN/NMTL/2008/G9P[23]

[19]

  1. ds direct submission
  2. aReference sequence length
  3. bSequences were aligned against the reference genotypes to determine segment coverage
  4. cStrain OK.5.68 is OK.5.68a G5P[6] or OK.5.68b G9P[7] but the NSP5 is unassigned to a or b