Table 3 Nucleotide and amino acid sequence and identity analyses of JL1808 and the other GETV strains
From: First isolation and characterization of Getah virus from cattle in northeastern China
Virus isolates | JL1808 (%) | ||||
|---|---|---|---|---|---|
Complete genome | Non-structural polyprotein | Structural polyprotein | |||
nt | nt | aa | nt | aa | |
14-I-605-C1 | 97.8 | 97.7 | 99.4 | 97.8 | 99.5 |
14-I-605-C2 | 97.8 | 97.7 | 99.4 | 97.7 | 99.5 |
15-I-752 | 97.8 | 97.6 | 99.3 | 97.7 | 99.5 |
15-I-1105 | 97.7 | 97.7 | 99.2 | 97.7 | 99.4 |
16-I-599 | 97.7 | 97.7 | 99.3 | 97.7 | 99.4 |
16-I-674 | 97.7 | 97.6 | 99.2 | 97.7 | 99.4 |
16-I-676 | 97.7 | 97.6 | 99.2 | 97.7 | 99.4 |
GETV-V1 | 97.9 | 97.9 | 99.4 | 97.7 | 99.4 |
HB0234 | 97.9 | 97.9 | 99.2 | 97.7 | 99.2 |
HuN1 | 99.5 | 99.4 | 99.7 | 99.7 | 99.9 |
Kochi/01/2005 | 99.6 | 99.6 | 99.7 | 99.6 | 99.7 |
LEIV 16275 Mag | 97.5 | 97.6 | 99.4 | 97.3 | 99.1 |
LEIV 17741 MPR | 98.6 | 98.5 | 99.5 | 98.6 | 99.6 |
M1 | 98.0 | 98.1 | 99.2 | 97.7 | 98.5 |
MI-110-C1 | 98.6 | 98.6 | 99.7 | 98.5 | 99.5 |
MI-110-C2 | 98.6 | 98.6 | 99.1 | 98.5 | 99.6 |
ROK | 98.2 | 98.2 | 99.6 | 98.1 | 99.5 |
Sagiyama virus | 97.3 | 97.5 | 99.3 | 96.8 | 98.3 |
SC1210 | 97.8 | 99.0 | 99.5 | 97.6 | 99.4 |
YN0540 | 98.0 | 97.9 | 99.5 | 97.9 | 99.5 |
YN12031 | 96.3 | 96.4 | 98.9 | 96.2 | 98.3 |