Table 1 Nucleotide and amino acid identities (%) between CH-HNSC-2018 and other bovine norovirus strains (14 strains: 6 full-length and 8 partial sequences)
From: Genetic and phylogenetic analyses of the first GIII.2 bovine norovirus in China
Strain | GenBank accession no. | Genome length (nt) | Genome nucleotide identities | Genea | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
p48 | NTPase | p22 | VPg | Pro | RdRp | VP1 | VP2 | ||||
Newbury2 | AF097917 | 7311 | 85.2 | 81.8/92.1 | 85.3/98.3 | 82.8/95.1 | 83.3/95.9 | 85.6/97.2 | 86.1/97.8 | 88.0/96.0 | 84.2/92.2 |
Dumfries | AY126474 | 7311 | 85.1 | 82.4/91.2 | 85.0/98.6 | 85.7/95.1 | 81.4/92.6 | 86.0/97.2 | 85.7/97.8 | 86.7/95.8 | 85.1/92.2 |
B309 | EU794907 | 7317 | 85.0 | 81.8/90.0 | 85.3/98.1 | 84.4/95.1 | 81.1/93.4 | 85.1/97.2 | 86.4/97.8 | 86.2/96.2 | 86.0/91.2 |
Adam2006 | NC_029645 | 7313 | 86.5 | 84.4/94.2 | 85.8/97.8 | 84.4/94.0 | 86.6/94.3 | 87.8/96.7 | 88.9/99.0 | 86.6/95.4 | 85.1/91.7 |
BET-17 | MK159169 | 7321 | 87.6 | 95.4/97.3 | 95.6/98.9 | 96.6/97.8 | 96.2/99.2 | 96.1/98.3 | 97.0/99.6 | 67.2/70.6 | 52.3/57.3 |
Jena | AJ011099 | 7338 | 85.1 | 72.8/77.6 | 77.4/92.1 | 64.4/68.8 | 68.8/75.7 | 72.1/87.0 | 75.2/89.7 | 67.9/69.2 | 63.3/68.2 |
BET-14 | MK159175 | 2683 | NA | NA | NA | NA | NA | NA | NA | 67.0/70.4 | 52.4/57.1 |
BET-1 | MK159174 | 2332 | NA | NA | NA | NA | NA | NA | NA | 67.2/70.6 | NA |
MILQ-1 | MK159173 | 2332 | NA | NA | NA | NA | NA | NA | NA | 67.2/70.6 | NA |
MIQW-12 | MK159172 | 2332 | NA | NA | NA | NA | NA | NA | NA | 67.2/70.6 | NA |
MI-43 | MK159171 | 2332 | NA | NA | NA | NA | NA | NA | NA | 66.9/70.6 | NA |
MI-48 | MK159170 | 2332 | NA | NA | NA | NA | NA | NA | NA | 66.9/70.6 | NA |
SCZ-3 | MK159152 | 803 | NA | NA | NA | NA | NA | NA | NA | NA | 92.6/85.0 |
SCZ-6 | MK159153 | 803 | NA | NA | NA | NA | NA | NA | NA | NA | 92.5/84.5 |