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Table 2 List of reference strains used for phylogenetic comparison with Polish isolates

From: Increased genetic variation of bovine viral diarrhea virus in dairy cattle in Poland

Pestivirus species

Subtype

Strain

5’UTR Accesion number

Npro Accesion number

BVDV-1

1a

NADL

AJ133738

AJ133738

BVDV-1

1a

Singer

DQ088995

DQ088995

BVDV-1

1b

VEDEVAC

AJ585412

AJ585412

BVDV-1

1b

OSLOSS

AY279528

M96687

BVDV-1

1b

Manas-1

EU555288

BVDV-1

1b

New York-1 (NY-1)

FJ387232

FJ387232

BVDV-1

1b

KE9

EF101530

EF101530

BVDV-1

1c

Shitara/01/05

AB359926

AB359926

BVDV-1

1c

GS1

JQ071526

BVDV-1

1c

Letuyi

EU159701

BVDV-1

1c

Manasi

EU159702

BVDV-1

1d

F

AF298065

AF287284

BVDV-1

1d

OK1(CA)NCP/03

AB359927

AB359927

BVDV-1

1d

DulanD44

KC414609

BVDV-1

1d

10JJ-SKR

KC757383

KC757383

BVDV-1

1d

BJ1308

KT951841

BVDV-1

1e

SLO/2407/2006

KX577637

KX577637

BVDV-1

1e

CN11a@09

MG434588

BVDV-1

1e

CH-05-02

EU180036

BVDV-1

1f

J-AT

FJ493480

BVDV-1

1f

J

AF287286

BVDV-1

1f

W

AF287290

BVDV-1

1f

O-1897/00–175

AY323895

AY323895

BVDV-1

1f

G-1703/99–43

AY323876

AY323876

BVDV-1

1f

E-1411/00–9

AY323872

BVDV-1

1f

B99/05

EU224259

BVDV-1

1 g

L

FJ493483

AF287287

BVDV-1

1 g

A-AT

FJ493482

BVDV-1

1 g

A

AF298064

AF287283

BVDV-1

1 g

10/08

JN715004

BVDV-1

1 g

48/08

JN833739

BVDV-1

1 h

G

AF298066

AF287285

BVDV-1

1 h

CH6569

MH907191

BVDV-1

1 h

B80/05

EU224239

BVDV-1

1 h

CH-95-11

EU180042

BVDV-1

1i

23–15

AF298059

AF287279

BVDV-1

1i

2186

JQ920329

BVDV-1

1i

MRI2497

LT902628

BVDV-1

1j

KS86-1ncp

AB078950

AB078950

BVDV-1

1j

2/Vr/95

AJ293594

BVDV-1

1j

Deer-GB1

U80902

BVDV-1

1 k

SuwaCp

AF117699

AY894998

BVDV-1

1 k

CH7247

MH907869

BVDV-1

1 k

Bohni

AY894997

BVDV-1

1 l

71–03

KF205294

BVDV-1

1 l

71–15

KF205306

KF205329

BVDV-1

1 l

CH-01-08

EU180033

BVDV-1

1 m

LZ05

GU120241

BVDV-1

1 m

ZM-95

AF526381

AF526381

BVDV-1

1 m

XC

MH166806

BVDV-1

1n

Shitara/02/06

AB359930

AB359930

BVDV-1

1n

So CP/75

AB359929

AB359929

BVDV-1

1o

AQGN96BI5

AB300691

BVDV-1

1o

IS25CP/01

AB359931

AB359931

BVDV-1

1o

HA2–12

KX218370

BVDV-1

1p

BJ0701

GU120247

GU120259

BVDV-1

1p

BJ0702

GU120248

GU120260

BVDV-1

1q

camel-6

KC695810

KC695810

BVDV-1

1q

SD0803

JN400273

JN400273

BVDV-1

1r

VE/245/12

LM994671

BVDV-1

1r

CA/181/10

LM994672

BVDV-1

1r

79/11

KY040384

KY040432

BVDV-1

1r

103/11

KY040372

KY040425

BVDV-1

1 s

UM/136/08

LM994673

LN515612

BVDV-1

1 s

mousedeer

AY158154

BVDV-1

1 s

2561

JQ920287

JQ920343

BVDV-1

1 s

22,146/81

AJ304376

BVDV-1

1 t

SI/207/12

LM994674

LN515611

BVDV-1

1u

M31182

JQ799141

JQ799141

BVDV-2

2a

New York’93

AF502399

KR093034

BVDV-2

2a

890

L32886

BVDV-2

2a

JZ05–1

GQ888686

GQ888686

BVDV-2

2b

Soldan

U94914

AY735495

BVDV-2

2b

Giessen 6

AY379547

BVDV-2

2b

Hokudai-Lab/09

AB567658

BVDV-2

2b

LV60–57-13

KM217405

BVDV-2

2c

NRW 12–13

HG426483

HG426483

BVDV-3

3

Th/04_KhonKaen (TKK)

FJ040215

FJ040215

BVDV-3

3

Italy-83/10-cp

JQ612705

JQ612705

BDV

X818

AF037405

AF037405

CSFV

Alfort/187

NC 038912

NC 038912